PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49351-49400 / 86044 show all | |||||||||||||||
| ckim-vqsr | SNP | ti | map_l100_m2_e0 | het | 85.8634 | 75.7005 | 99.1784 | 83.8574 | 23181 | 7441 | 23176 | 192 | 12 | 6.2500 | |
| gduggal-snapfb | SNP | ti | HG002compoundhet | * | 85.8670 | 98.1291 | 76.3290 | 43.9481 | 17151 | 327 | 17345 | 5379 | 340 | 6.3209 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 85.8671 | 76.8612 | 97.2637 | 69.0054 | 382 | 115 | 391 | 11 | 10 | 90.9091 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 85.8676 | 81.3559 | 90.9091 | 64.8402 | 144 | 33 | 140 | 14 | 3 | 21.4286 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 85.8694 | 82.8315 | 89.1386 | 45.6102 | 18430 | 3820 | 18400 | 2242 | 2180 | 97.2346 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 85.8712 | 78.6982 | 94.4828 | 72.7955 | 133 | 36 | 137 | 8 | 8 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 85.8715 | 81.4199 | 90.8380 | 65.8788 | 539 | 123 | 813 | 82 | 43 | 52.4390 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m2_e0 | het | 85.8721 | 89.5833 | 82.4561 | 89.4834 | 43 | 5 | 47 | 10 | 5 | 50.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 85.8733 | 81.0734 | 91.2773 | 61.1380 | 287 | 67 | 293 | 28 | 27 | 96.4286 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 85.8841 | 77.2727 | 96.6555 | 54.2813 | 289 | 85 | 289 | 10 | 9 | 90.0000 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 85.8841 | 77.2727 | 96.6555 | 54.2113 | 289 | 85 | 289 | 10 | 9 | 90.0000 | |
| ndellapenna-hhga | INDEL | * | map_siren | hetalt | 85.8846 | 78.1377 | 95.3368 | 88.2532 | 193 | 54 | 184 | 9 | 5 | 55.5556 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 85.8873 | 84.9119 | 86.8852 | 57.3613 | 1784 | 317 | 1696 | 256 | 250 | 97.6562 | |
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 85.8875 | 93.5591 | 79.3786 | 89.7033 | 2542 | 175 | 2606 | 677 | 208 | 30.7238 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 85.8876 | 95.4769 | 78.0488 | 76.6109 | 5826 | 276 | 5856 | 1647 | 1442 | 87.5531 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 85.8885 | 77.2727 | 96.6667 | 81.2500 | 34 | 10 | 29 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_siren | * | 85.8913 | 80.9294 | 91.5013 | 89.0859 | 2856 | 673 | 3273 | 304 | 56 | 18.4211 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 85.9015 | 77.6154 | 96.1682 | 66.3211 | 16997 | 4902 | 16966 | 676 | 597 | 88.3136 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 85.9048 | 76.5734 | 97.8261 | 53.6290 | 219 | 67 | 225 | 5 | 5 | 100.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 85.9048 | 76.5734 | 97.8261 | 53.4413 | 219 | 67 | 225 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 85.9089 | 82.5503 | 89.5522 | 75.5027 | 123 | 26 | 120 | 14 | 12 | 85.7143 | |
| eyeh-varpipe | INDEL | D6_15 | map_l125_m2_e1 | * | 85.9091 | 84.3750 | 87.5000 | 87.8981 | 108 | 20 | 133 | 19 | 18 | 94.7368 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 85.9154 | 76.4472 | 98.0606 | 64.1454 | 2879 | 887 | 2882 | 57 | 53 | 92.9825 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 85.9154 | 76.4472 | 98.0606 | 64.1454 | 2879 | 887 | 2882 | 57 | 53 | 92.9825 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 85.9187 | 79.7297 | 93.1494 | 34.9226 | 118 | 30 | 979 | 72 | 70 | 97.2222 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 85.9189 | 75.5734 | 99.5461 | 25.8137 | 659 | 213 | 658 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 85.9225 | 80.8559 | 91.6667 | 87.7792 | 359 | 85 | 341 | 31 | 12 | 38.7097 | |
| qzeng-custom | INDEL | D6_15 | func_cds | * | 85.9267 | 90.6977 | 81.6327 | 50.0000 | 39 | 4 | 40 | 9 | 1 | 11.1111 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 85.9332 | 98.8085 | 76.0265 | 77.4229 | 32840 | 396 | 32867 | 10364 | 9929 | 95.8028 | |
| gduggal-snapvard | INDEL | * | map_l100_m1_e0 | * | 85.9341 | 89.2080 | 82.8920 | 85.9643 | 3199 | 387 | 4414 | 911 | 427 | 46.8716 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 85.9341 | 80.4598 | 92.2078 | 71.1610 | 70 | 17 | 71 | 6 | 5 | 83.3333 | |
| gduggal-snapvard | SNP | tv | map_l125_m0_e0 | het | 85.9375 | 96.6599 | 77.3564 | 84.6449 | 4254 | 147 | 4243 | 1242 | 59 | 4.7504 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 85.9388 | 97.7778 | 76.6571 | 63.2415 | 264 | 6 | 266 | 81 | 78 | 96.2963 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 85.9409 | 75.3478 | 100.0000 | 40.3027 | 975 | 319 | 1065 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | map_l150_m1_e0 | * | 85.9418 | 83.5616 | 88.4615 | 94.3723 | 61 | 12 | 69 | 9 | 3 | 33.3333 | |
| mlin-fermikit | INDEL | D1_5 | map_siren | homalt | 85.9425 | 85.3596 | 86.5334 | 78.1760 | 997 | 171 | 996 | 155 | 149 | 96.1290 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 85.9444 | 77.0743 | 97.1216 | 57.5074 | 14073 | 4186 | 14070 | 417 | 292 | 70.0240 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 85.9454 | 75.3546 | 100.0000 | 48.7179 | 425 | 139 | 420 | 0 | 0 | ||
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 85.9460 | 91.8919 | 80.7229 | 54.8913 | 34 | 3 | 134 | 32 | 8 | 25.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | HG002compoundhet | hetalt | 85.9482 | 75.6238 | 99.5374 | 35.2988 | 6456 | 2081 | 6455 | 30 | 20 | 66.6667 | |
| gduggal-snapvard | INDEL | * | map_l125_m2_e0 | * | 85.9487 | 92.0310 | 80.6206 | 88.8530 | 2021 | 175 | 2754 | 662 | 269 | 40.6344 | |
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 85.9498 | 90.2468 | 82.0433 | 90.3390 | 768 | 83 | 795 | 174 | 11 | 6.3218 | |
| ckim-vqsr | SNP | ti | map_l100_m2_e1 | het | 85.9506 | 75.8301 | 99.1886 | 83.8404 | 23477 | 7483 | 23472 | 192 | 12 | 6.2500 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 85.9514 | 98.2249 | 76.4045 | 86.5356 | 166 | 3 | 68 | 21 | 20 | 95.2381 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 85.9519 | 83.7838 | 88.2353 | 61.3636 | 31 | 6 | 15 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 85.9520 | 98.7396 | 76.0968 | 60.6268 | 6659 | 85 | 6730 | 2114 | 90 | 4.2573 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 85.9526 | 84.9119 | 87.0190 | 57.3989 | 1784 | 317 | 1696 | 253 | 247 | 97.6285 | |
| gduggal-snapvard | INDEL | * | segdup | het | 85.9532 | 91.8827 | 80.7426 | 95.9123 | 1347 | 119 | 1631 | 389 | 289 | 74.2931 | |
| ciseli-custom | SNP | * | map_l125_m0_e0 | homalt | 85.9540 | 85.1609 | 86.7620 | 68.6495 | 5716 | 996 | 5702 | 870 | 708 | 81.3793 | |
| gduggal-bwafb | INDEL | * | HG002complexvar | hetalt | 85.9574 | 79.3998 | 93.6957 | 80.8679 | 2937 | 762 | 1293 | 87 | 84 | 96.5517 | |