PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
48901-48950 / 86044 show all | |||||||||||||||
| gduggal-snapplat | SNP | tv | map_l250_m1_e0 | * | 85.6503 | 79.4862 | 92.8508 | 94.0020 | 2104 | 543 | 2104 | 162 | 67 | 41.3580 | |
| gduggal-snapvard | INDEL | * | map_siren | het | 85.6604 | 93.9663 | 78.7036 | 86.4515 | 4236 | 272 | 4978 | 1347 | 630 | 46.7706 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 85.6607 | 94.4974 | 78.3354 | 70.0293 | 1288 | 75 | 1280 | 354 | 318 | 89.8305 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 85.6704 | 84.8021 | 86.5567 | 80.2451 | 36749 | 6586 | 37209 | 5779 | 5249 | 90.8289 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 85.6750 | 96.3113 | 77.1544 | 58.1338 | 4282 | 164 | 4978 | 1474 | 1427 | 96.8114 | |
| raldana-dualsentieon | INDEL | D1_5 | HG002compoundhet | het | 85.6766 | 80.3241 | 91.7935 | 77.7237 | 1388 | 340 | 1387 | 124 | 122 | 98.3871 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 85.6804 | 77.2455 | 96.1832 | 69.2488 | 129 | 38 | 126 | 5 | 4 | 80.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m2_e0 | * | 85.6819 | 80.6649 | 91.3644 | 92.9665 | 922 | 221 | 1058 | 100 | 21 | 21.0000 | |
| astatham-gatk | SNP | * | map_l125_m1_e0 | het | 85.6838 | 75.1515 | 99.6496 | 79.7424 | 21337 | 7055 | 21331 | 75 | 27 | 36.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 85.6847 | 76.6260 | 97.1722 | 71.5227 | 377 | 115 | 378 | 11 | 10 | 90.9091 | |
| gduggal-bwafb | INDEL | D16_PLUS | * | homalt | 85.6946 | 83.9835 | 87.4769 | 60.7791 | 1421 | 271 | 1418 | 203 | 203 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 85.6957 | 76.2712 | 97.7778 | 48.8636 | 45 | 14 | 44 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 85.6972 | 75.6757 | 98.7780 | 69.6726 | 504 | 162 | 485 | 6 | 1 | 16.6667 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 85.6972 | 75.6757 | 98.7780 | 69.6726 | 504 | 162 | 485 | 6 | 1 | 16.6667 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 85.6996 | 85.4251 | 85.9760 | 54.8462 | 633 | 108 | 1502 | 245 | 198 | 80.8163 | |
| gduggal-snapplat | INDEL | I1_5 | map_siren | homalt | 85.7005 | 79.2079 | 93.3526 | 86.1508 | 960 | 252 | 969 | 69 | 6 | 8.6957 | |
| gduggal-snapplat | INDEL | D1_5 | decoy | * | 85.7143 | 75.0000 | 100.0000 | 99.9884 | 3 | 1 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l150_m0_e0 | het | 85.7143 | 75.0000 | 100.0000 | 92.1053 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m1_e0 | het | 85.7143 | 75.0000 | 100.0000 | 94.4444 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m2_e0 | * | 85.7143 | 75.0000 | 100.0000 | 94.6903 | 6 | 2 | 6 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m2_e1 | * | 85.7143 | 75.0000 | 100.0000 | 95.0413 | 6 | 2 | 6 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | decoy | het | 85.7143 | 100.0000 | 75.0000 | 99.9649 | 2 | 0 | 3 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | func_cds | homalt | 85.7143 | 75.0000 | 100.0000 | 66.6667 | 3 | 1 | 3 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 99.4094 | 3 | 1 | 3 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 99.4152 | 3 | 1 | 3 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 85.7143 | 75.0000 | 100.0000 | 99.4152 | 3 | 1 | 3 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | decoy | * | 85.7143 | 75.0000 | 100.0000 | 99.9798 | 3 | 1 | 3 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 85.7143 | 85.7143 | 85.7143 | 99.5760 | 6 | 1 | 6 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l250_m1_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 97.0000 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-snapplat | SNP | ti | map_l100_m1_e0 | hetalt | 85.7143 | 93.1034 | 79.4118 | 79.6407 | 27 | 2 | 27 | 7 | 7 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l250_m1_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 95.0000 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | map_l250_m1_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 97.0000 | 3 | 1 | 3 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 85.7143 | 75.0000 | 100.0000 | 96.6292 | 33 | 11 | 33 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 85.7143 | 93.7500 | 78.9474 | 93.8907 | 15 | 1 | 15 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 85.7143 | 93.7500 | 78.9474 | 93.9683 | 15 | 1 | 15 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 85.7143 | 75.0000 | 100.0000 | 92.5000 | 3 | 1 | 3 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l125_m0_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 90.3226 | 9 | 3 | 9 | 0 | 0 | ||
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 85.7143 | 100.0000 | 75.0000 | 97.3684 | 9 | 0 | 9 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 92.3077 | 3 | 1 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l150_m0_e0 | * | 85.7143 | 75.0000 | 100.0000 | 94.8718 | 6 | 2 | 6 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l150_m2_e1 | * | 85.7143 | 77.7778 | 95.4545 | 92.3345 | 21 | 6 | 21 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l250_m1_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 92.1569 | 3 | 0 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l250_m2_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 92.8571 | 3 | 0 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l250_m2_e1 | homalt | 85.7143 | 100.0000 | 75.0000 | 93.1034 | 3 | 0 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 85.7143 | 100.0000 | 75.0000 | 97.3422 | 7 | 0 | 6 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | D1_5 | decoy | * | 85.7143 | 75.0000 | 100.0000 | 99.9740 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 85.7143 | 81.8182 | 90.0000 | 99.5646 | 9 | 2 | 9 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | func_cds | homalt | 85.7143 | 75.0000 | 100.0000 | 57.1429 | 9 | 3 | 9 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | map_l250_m1_e0 | * | 85.7143 | 83.3333 | 88.2353 | 97.4203 | 15 | 3 | 15 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l125_m1_e0 | het | 85.7143 | 100.0000 | 75.0000 | 91.7241 | 9 | 0 | 9 | 3 | 2 | 66.6667 | |