PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
47151-47200 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 82.3529 | 70.0000 | 100.0000 | 99.4125 | 14 | 6 | 14 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | map_l150_m0_e0 | * | 82.3529 | 100.0000 | 70.0000 | 97.6581 | 7 | 0 | 7 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l150_m0_e0 | het | 82.3529 | 100.0000 | 70.0000 | 96.8944 | 7 | 0 | 7 | 3 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 82.3529 | 70.0000 | 100.0000 | 99.7165 | 7 | 3 | 7 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | map_l125_m2_e1 | homalt | 82.3529 | 75.6757 | 90.3226 | 90.4615 | 28 | 9 | 28 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 82.3529 | 77.7778 | 87.5000 | 96.5217 | 7 | 2 | 7 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | decoy | * | 82.3529 | 70.0000 | 100.0000 | 99.9638 | 7 | 3 | 7 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m0_e0 | het | 82.3529 | 87.5000 | 77.7778 | 91.4286 | 7 | 1 | 7 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m2_e1 | * | 82.3529 | 75.0000 | 91.3043 | 90.1709 | 21 | 7 | 21 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l250_m2_e0 | homalt | 82.3529 | 70.0000 | 100.0000 | 96.7807 | 42 | 18 | 48 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | map_l250_m2_e1 | homalt | 82.3529 | 70.0000 | 100.0000 | 96.8545 | 42 | 18 | 48 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | tech_badpromoters | het | 82.3529 | 70.0000 | 100.0000 | 58.8235 | 7 | 3 | 7 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | HG002compoundhet | * | 82.3584 | 75.6514 | 90.3704 | 28.6893 | 1771 | 570 | 1952 | 208 | 208 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m1_e0 | * | 82.3612 | 70.6024 | 98.8196 | 86.4457 | 586 | 244 | 586 | 7 | 2 | 28.5714 | |
| gduggal-bwavard | INDEL | * | map_l250_m1_e0 | * | 82.3699 | 93.4426 | 73.6434 | 96.1257 | 285 | 20 | 285 | 102 | 15 | 14.7059 | |
| gduggal-snapplat | INDEL | I1_5 | map_l100_m2_e1 | * | 82.3761 | 78.0645 | 87.1917 | 92.5152 | 1089 | 306 | 1096 | 161 | 8 | 4.9689 | |
| ciseli-custom | SNP | * | HG002compoundhet | homalt | 82.3846 | 93.4613 | 73.6552 | 42.1506 | 10077 | 705 | 10037 | 3590 | 971 | 27.0474 | |
| gduggal-bwaplat | INDEL | D6_15 | HG002complexvar | hetalt | 82.3891 | 72.0632 | 96.1691 | 62.5248 | 730 | 283 | 728 | 29 | 27 | 93.1034 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 82.3899 | 73.5955 | 93.5714 | 59.8854 | 131 | 47 | 131 | 9 | 3 | 33.3333 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 82.3910 | 88.2353 | 77.2727 | 89.0547 | 45 | 6 | 34 | 10 | 2 | 20.0000 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 82.3970 | 81.4815 | 83.3333 | 78.7402 | 110 | 25 | 90 | 18 | 17 | 94.4444 | |
| gduggal-snapfb | SNP | * | HG002complexvar | hetalt | 82.4000 | 99.6774 | 70.2273 | 54.9642 | 309 | 1 | 309 | 131 | 28 | 21.3740 | |
| gduggal-snapfb | SNP | tv | HG002complexvar | hetalt | 82.4000 | 99.6774 | 70.2273 | 54.9642 | 309 | 1 | 309 | 131 | 28 | 21.3740 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 82.4034 | 96.8987 | 71.6806 | 60.7006 | 1531 | 49 | 1544 | 610 | 3 | 0.4918 | |
| qzeng-custom | SNP | * | map_l100_m0_e0 | homalt | 82.4060 | 70.4991 | 99.1522 | 62.7863 | 8192 | 3428 | 8070 | 69 | 68 | 98.5507 | |
| gduggal-snapplat | INDEL | I1_5 | map_l100_m1_e0 | * | 82.4097 | 78.1927 | 87.1074 | 91.8447 | 1047 | 292 | 1054 | 156 | 8 | 5.1282 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 82.4109 | 89.4163 | 76.4235 | 49.0835 | 3278 | 388 | 3248 | 1002 | 864 | 86.2275 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m2_e0 | * | 82.4121 | 91.1111 | 75.2294 | 95.6746 | 82 | 8 | 82 | 27 | 4 | 14.8148 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 82.4169 | 95.5954 | 72.4316 | 76.0055 | 43689 | 2013 | 43987 | 16742 | 965 | 5.7640 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 82.4169 | 95.5954 | 72.4316 | 76.0055 | 43689 | 2013 | 43987 | 16742 | 965 | 5.7640 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 82.4178 | 78.4483 | 86.8106 | 63.9896 | 364 | 100 | 362 | 55 | 35 | 63.6364 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 82.4180 | 70.7101 | 98.7723 | 34.9310 | 1673 | 693 | 1770 | 22 | 18 | 81.8182 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 82.4185 | 78.1955 | 87.1237 | 60.0801 | 104 | 29 | 521 | 77 | 54 | 70.1299 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m2_e0 | het | 82.4197 | 70.5502 | 99.0909 | 92.6224 | 218 | 91 | 218 | 2 | 1 | 50.0000 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 82.4233 | 87.4656 | 77.9307 | 54.2101 | 1905 | 273 | 5378 | 1523 | 867 | 56.9271 | |
| qzeng-custom | INDEL | * | map_l125_m2_e1 | het | 82.4242 | 74.4318 | 92.3395 | 93.1454 | 1048 | 360 | 1338 | 111 | 36 | 32.4324 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 82.4324 | 70.1149 | 100.0000 | 99.9146 | 61 | 26 | 60 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 82.4326 | 94.7547 | 72.9465 | 54.9486 | 1120 | 62 | 1119 | 415 | 412 | 99.2771 | |
| gduggal-snapfb | INDEL | I6_15 | map_siren | het | 82.4328 | 77.6224 | 87.8788 | 67.1968 | 111 | 32 | 145 | 20 | 18 | 90.0000 | |
| ckim-gatk | SNP | tv | map_l100_m2_e0 | homalt | 82.4340 | 70.1324 | 99.9691 | 70.6315 | 6462 | 2752 | 6462 | 2 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 82.4371 | 78.7879 | 86.4407 | 86.8304 | 52 | 14 | 51 | 8 | 5 | 62.5000 | |
| gduggal-snapvard | INDEL | * | map_l150_m2_e0 | het | 82.4377 | 96.1369 | 72.1557 | 91.9661 | 871 | 35 | 1205 | 465 | 145 | 31.1828 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 82.4404 | 73.1758 | 94.3910 | 71.5718 | 1765 | 647 | 1767 | 105 | 26 | 24.7619 | |
| gduggal-bwaplat | INDEL | * | * | hetalt | 82.4487 | 71.6091 | 97.1551 | 71.6669 | 18072 | 7165 | 18066 | 529 | 513 | 96.9754 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m0_e0 | * | 82.4496 | 82.1429 | 82.7586 | 90.9375 | 23 | 5 | 24 | 5 | 2 | 40.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 82.4497 | 80.3922 | 84.6154 | 93.4233 | 41 | 10 | 33 | 6 | 3 | 50.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 82.4503 | 70.7523 | 98.7826 | 36.8825 | 1674 | 692 | 568 | 7 | 7 | 100.0000 | |
| gduggal-snapvard | INDEL | * | map_l150_m2_e1 | het | 82.4518 | 96.1039 | 72.1960 | 92.0188 | 888 | 36 | 1223 | 471 | 147 | 31.2102 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 82.4534 | 76.4045 | 89.5425 | 70.1754 | 136 | 42 | 137 | 16 | 16 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l100_m2_e1 | homalt | 82.4561 | 70.1493 | 100.0000 | 82.4627 | 47 | 20 | 47 | 0 | 0 | ||