PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
45901-45950 / 86044 show all | |||||||||||||||
| qzeng-custom | SNP | tv | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 89.7959 | 20 | 10 | 20 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 91.1111 | 20 | 10 | 20 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l125_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 91.1111 | 20 | 10 | 20 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l150_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.0392 | 2 | 1 | 2 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 80.0000 | 80.0000 | 80.0000 | 99.4331 | 4 | 1 | 4 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 80.0000 | 66.6667 | 100.0000 | 97.9167 | 2 | 1 | 2 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 80.0000 | 80.0000 | 80.0000 | 96.6216 | 4 | 1 | 4 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l250_m1_e0 | * | 80.0000 | 100.0000 | 66.6667 | 95.1220 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 84.6154 | 2 | 1 | 2 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 88.2353 | 2 | 1 | 2 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 89.4737 | 2 | 1 | 2 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | tech_badpromoters | hetalt | 80.0000 | 66.6667 | 100.0000 | 60.0000 | 2 | 1 | 2 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.9899 | 2 | 1 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.8506 | 2 | 1 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 80.0000 | 100.0000 | 66.6667 | 96.9697 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 80.0000 | 83.3333 | 76.9231 | 99.2709 | 10 | 2 | 10 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 80.0000 | 66.6667 | 100.0000 | 37.6590 | 1078 | 539 | 1225 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 80.0000 | 66.6667 | 100.0000 | 90.6250 | 6 | 3 | 6 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 80.0000 | 100.0000 | 66.6667 | 99.3534 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 92.8571 | 2 | 1 | 2 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 95.0000 | 2 | 1 | 2 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 95.3488 | 2 | 1 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.0000 | 100.0000 | 66.6667 | 86.9565 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 80.0000 | 100.0000 | 66.6667 | 96.2733 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 80.0000 | 100.0000 | 66.6667 | 98.1481 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 80.0000 | 100.0000 | 66.6667 | 98.5366 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 80.0000 | 100.0000 | 66.6667 | 98.5714 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 80.0000 | 66.6667 | 100.0000 | 35.7143 | 8 | 4 | 9 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m0_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 95.0000 | 4 | 2 | 4 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | map_l150_m2_e1 | het | 80.0000 | 75.0000 | 85.7143 | 93.7500 | 12 | 4 | 12 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.0000 | 66.6667 | 100.0000 | 96.1538 | 4 | 2 | 4 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.4848 | 2 | 1 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.3051 | 2 | 1 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 80.0000 | 100.0000 | 66.6667 | 96.7742 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 80.0000 | 80.0000 | 80.0000 | 94.6237 | 4 | 1 | 4 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 64.2857 | 20 | 10 | 20 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | segdup | hetalt | 80.0000 | 66.6667 | 100.0000 | 93.4783 | 6 | 3 | 6 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 80.0000 | 100.0000 | 66.6667 | 97.6562 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l100_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 87.5000 | 2 | 1 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 87.5000 | 2 | 1 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l100_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 87.5000 | 2 | 1 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 84.6154 | 2 | 1 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 88.2353 | 2 | 1 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 84.6154 | 2 | 1 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 90.4762 | 2 | 1 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l125_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 84.6154 | 2 | 1 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 80.0000 | 66.6667 | 100.0000 | 90.9091 | 2 | 1 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l150_m0_e0 | het | 80.0000 | 100.0000 | 66.6667 | 76.9231 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l150_m1_e0 | * | 80.0000 | 72.7273 | 88.8889 | 83.0189 | 8 | 3 | 8 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 84.6154 | 2 | 1 | 2 | 0 | 0 | ||