PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
45601-45650 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | D1_5 | tech_badpromoters | homalt | 80.0000 | 66.6667 | 100.0000 | 40.0000 | 6 | 3 | 6 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | func_cds | homalt | 80.0000 | 66.6667 | 100.0000 | 60.0000 | 8 | 4 | 8 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 80.0000 | 87.5000 | 73.6842 | 79.3478 | 14 | 2 | 14 | 5 | 5 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l100_m1_e0 | het | 80.0000 | 88.1356 | 73.2394 | 89.4659 | 52 | 7 | 52 | 19 | 15 | 78.9474 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 80.0000 | 100.0000 | 66.6667 | 94.8276 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 80.0000 | 84.6154 | 75.8621 | 96.7634 | 22 | 4 | 22 | 7 | 1 | 14.2857 | |
| gduggal-snapplat | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 80.0000 | 76.9231 | 83.3333 | 86.3636 | 10 | 3 | 10 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 80.0000 | 100.0000 | 66.6667 | 97.1429 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l250_m2_e0 | hetalt | 80.0000 | 80.0000 | 80.0000 | 95.7265 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l250_m2_e1 | hetalt | 80.0000 | 80.0000 | 80.0000 | 95.7265 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 80.0000 | 100.0000 | 66.6667 | 96.2500 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l100_m0_e0 | hetalt | 80.0000 | 85.7143 | 75.0000 | 81.3953 | 12 | 2 | 12 | 4 | 4 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l250_m2_e0 | hetalt | 80.0000 | 80.0000 | 80.0000 | 92.7536 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l250_m2_e1 | hetalt | 80.0000 | 80.0000 | 80.0000 | 92.7536 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 80.0000 | 76.9231 | 83.3333 | 86.3636 | 10 | 3 | 10 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | SNP | tv | map_l250_m2_e0 | hetalt | 80.0000 | 80.0000 | 80.0000 | 95.7265 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_l250_m2_e1 | hetalt | 80.0000 | 80.0000 | 80.0000 | 95.7265 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 80.0000 | 66.6667 | 100.0000 | 98.1982 | 2 | 1 | 2 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 80.0000 | 100.0000 | 66.6667 | 98.9583 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 80.0000 | 100.0000 | 66.6667 | 97.9167 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 80.0000 | 100.0000 | 66.6667 | 98.9305 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 80.0000 | 100.0000 | 66.6667 | 97.9021 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l250_m1_e0 | * | 80.0000 | 100.0000 | 66.6667 | 95.5224 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 80.0000 | 100.0000 | 66.6667 | 98.5075 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | I6_15 | tech_badpromoters | het | 80.0000 | 85.7143 | 75.0000 | 62.5000 | 6 | 1 | 9 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 90.9091 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 93.1034 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.0000 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 80.0000 | 66.6667 | 100.0000 | 95.9596 | 4 | 2 | 4 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 80.0000 | 66.6667 | 100.0000 | 96.8750 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 90.4762 | 4 | 2 | 4 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 91.5493 | 6 | 3 | 6 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 97.0149 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m0_e0 | het | 80.0000 | 66.6667 | 100.0000 | 98.7805 | 10 | 5 | 10 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m2_e0 | het | 80.0000 | 66.6667 | 100.0000 | 97.6190 | 44 | 22 | 44 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m2_e1 | het | 80.0000 | 66.6667 | 100.0000 | 97.6866 | 44 | 22 | 44 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 90.6250 | 2 | 1 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 92.6829 | 2 | 1 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 93.1818 | 2 | 1 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | tech_badpromoters | homalt | 80.0000 | 66.6667 | 100.0000 | 60.0000 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 80.0000 | 66.6667 | 100.0000 | 92.4242 | 10 | 5 | 10 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 80.0000 | 66.6667 | 100.0000 | 95.0820 | 6 | 3 | 6 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.0000 | 66.6667 | 100.0000 | 94.8052 | 4 | 2 | 4 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | map_l100_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 94.2857 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 94.8718 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | map_l100_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 95.0000 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 92.0000 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 92.3077 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | map_l125_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 92.3077 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | map_l150_m0_e0 | het | 80.0000 | 100.0000 | 66.6667 | 98.0892 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |