PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
44501-44550 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | SNP | ti | map_l100_m2_e1 | homalt | 77.3423 | 63.0691 | 99.9657 | 71.0565 | 11664 | 6830 | 11653 | 4 | 4 | 100.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 77.3481 | 68.6275 | 88.6076 | 92.5047 | 70 | 32 | 70 | 9 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 77.3509 | 67.3423 | 90.8537 | 63.9164 | 299 | 145 | 298 | 30 | 27 | 90.0000 | |
| anovak-vg | SNP | tv | HG002compoundhet | homalt | 77.3553 | 84.3861 | 71.4060 | 43.1411 | 2859 | 529 | 2717 | 1088 | 616 | 56.6176 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m0_e0 | * | 77.3562 | 63.7097 | 98.4424 | 89.5098 | 316 | 180 | 316 | 5 | 1 | 20.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 77.3563 | 63.1748 | 99.7477 | 25.6850 | 5114 | 2981 | 5140 | 13 | 13 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l125_m2_e1 | * | 77.3663 | 73.4375 | 81.7391 | 90.2294 | 94 | 34 | 94 | 21 | 20 | 95.2381 | |
| ckim-isaac | INDEL | * | map_l100_m2_e1 | homalt | 77.3702 | 63.3880 | 99.2665 | 77.2272 | 812 | 469 | 812 | 6 | 3 | 50.0000 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 77.3737 | 66.0300 | 93.4236 | 68.0667 | 484 | 249 | 483 | 34 | 28 | 82.3529 | |
| ckim-isaac | INDEL | * | map_l100_m2_e0 | homalt | 77.3850 | 63.3624 | 99.3781 | 77.0744 | 799 | 462 | 799 | 5 | 3 | 60.0000 | |
| gduggal-snapfb | INDEL | I1_5 | HG002compoundhet | * | 77.3920 | 77.8731 | 76.9169 | 63.1671 | 9622 | 2734 | 10473 | 3143 | 1735 | 55.2020 | |
| ciseli-custom | INDEL | D1_5 | map_l100_m0_e0 | * | 77.3981 | 72.8853 | 82.5065 | 89.4982 | 629 | 234 | 632 | 134 | 63 | 47.0149 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 77.4004 | 63.2326 | 99.7503 | 28.0442 | 5168 | 3005 | 5193 | 13 | 13 | 100.0000 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 77.4016 | 63.6945 | 98.6259 | 40.8078 | 6672 | 3803 | 6316 | 88 | 82 | 93.1818 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 77.4032 | 63.1365 | 100.0000 | 29.1489 | 310 | 181 | 333 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 77.4037 | 66.6667 | 92.2631 | 96.6489 | 2 | 1 | 477 | 40 | 5 | 12.5000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l150_m2_e0 | * | 77.4055 | 68.0000 | 89.8305 | 85.8852 | 17 | 8 | 53 | 6 | 5 | 83.3333 | |
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 77.4069 | 76.4295 | 78.4096 | 44.8000 | 9076 | 2799 | 9239 | 2544 | 1839 | 72.2877 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 77.4124 | 95.3132 | 65.1724 | 81.3112 | 6345 | 312 | 6426 | 3434 | 185 | 5.3873 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 77.4165 | 63.6080 | 98.8826 | 71.6925 | 5913 | 3383 | 5575 | 63 | 56 | 88.8889 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 77.4166 | 67.7028 | 90.3846 | 37.1872 | 4857 | 2317 | 658 | 70 | 69 | 98.5714 | |
| gduggal-bwavard | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 77.4194 | 100.0000 | 63.1579 | 99.6078 | 12 | 0 | 12 | 7 | 5 | 71.4286 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 77.4194 | 92.3077 | 66.6667 | 82.1002 | 48 | 4 | 50 | 25 | 17 | 68.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | tech_badpromoters | * | 77.4194 | 63.1579 | 100.0000 | 62.5000 | 12 | 7 | 12 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 77.4194 | 75.0000 | 80.0000 | 64.2857 | 3 | 1 | 4 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 77.4194 | 75.0000 | 80.0000 | 92.1875 | 6 | 2 | 4 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 77.4194 | 75.0000 | 80.0000 | 91.0714 | 6 | 2 | 4 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | decoy | * | 77.4194 | 75.0000 | 80.0000 | 99.9469 | 3 | 1 | 4 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | D6_15 | map_l250_m0_e0 | het | 77.4194 | 75.0000 | 80.0000 | 98.0695 | 3 | 1 | 4 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 77.4194 | 75.0000 | 80.0000 | 92.1875 | 6 | 2 | 4 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l150_m0_e0 | het | 77.4194 | 75.0000 | 80.0000 | 97.3545 | 3 | 1 | 4 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l250_m1_e0 | het | 77.4194 | 75.0000 | 80.0000 | 97.7376 | 3 | 1 | 4 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 77.4194 | 75.0000 | 80.0000 | 92.3077 | 6 | 2 | 4 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 77.4194 | 75.0000 | 80.0000 | 92.3077 | 6 | 2 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l100_m0_e0 | * | 77.4194 | 72.7273 | 82.7586 | 80.5369 | 24 | 9 | 24 | 5 | 4 | 80.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 77.4194 | 75.0000 | 80.0000 | 68.7500 | 6 | 2 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 77.4194 | 75.0000 | 80.0000 | 72.2222 | 6 | 2 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 77.4194 | 75.0000 | 80.0000 | 72.2222 | 6 | 2 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | decoy | * | 77.4194 | 75.0000 | 80.0000 | 99.9600 | 3 | 1 | 4 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l250_m0_e0 | het | 77.4194 | 75.0000 | 80.0000 | 98.1884 | 3 | 1 | 4 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 77.4194 | 75.0000 | 80.0000 | 89.3617 | 3 | 1 | 4 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 77.4194 | 75.0000 | 80.0000 | 88.8889 | 6 | 2 | 4 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 77.4194 | 75.0000 | 80.0000 | 92.1875 | 6 | 2 | 4 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 77.4194 | 75.0000 | 80.0000 | 92.5373 | 6 | 2 | 4 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 77.4194 | 63.1579 | 100.0000 | 89.6552 | 12 | 7 | 12 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 77.4194 | 63.1579 | 100.0000 | 89.9160 | 12 | 7 | 12 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 77.4194 | 63.1579 | 100.0000 | 90.1408 | 12 | 7 | 7 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 77.4194 | 63.1579 | 100.0000 | 90.7895 | 12 | 7 | 7 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | func_cds | het | 77.4194 | 100.0000 | 63.1579 | 33.3333 | 24 | 0 | 24 | 14 | 2 | 14.2857 | |
| jpowers-varprowl | INDEL | I6_15 | segdup | het | 77.4194 | 86.7470 | 69.9029 | 92.0952 | 72 | 11 | 72 | 31 | 31 | 100.0000 | |