PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43901-43950 / 86044 show all | |||||||||||||||
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 75.8922 | 93.2127 | 64.0000 | 92.1573 | 206 | 15 | 208 | 117 | 11 | 9.4017 | |
| mlin-fermikit | INDEL | D1_5 | map_l100_m1_e0 | het | 75.8984 | 62.7792 | 95.9494 | 75.4582 | 759 | 450 | 758 | 32 | 18 | 56.2500 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 75.9055 | 69.1535 | 84.1187 | 50.6034 | 482 | 215 | 482 | 91 | 88 | 96.7033 | |
| qzeng-custom | SNP | * | map_l250_m2_e1 | * | 75.9076 | 64.2294 | 92.7764 | 95.4610 | 5130 | 2857 | 5086 | 396 | 330 | 83.3333 | |
| qzeng-custom | INDEL | * | map_l250_m2_e1 | * | 75.9087 | 66.0661 | 89.1975 | 97.9280 | 220 | 113 | 289 | 35 | 17 | 48.5714 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 75.9096 | 68.0162 | 85.8757 | 72.5581 | 168 | 79 | 152 | 25 | 16 | 64.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_siren | hetalt | 75.9124 | 61.9048 | 98.1132 | 96.3423 | 52 | 32 | 52 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m2_e1 | * | 75.9124 | 61.1765 | 100.0000 | 96.6858 | 52 | 33 | 52 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 75.9168 | 99.5247 | 61.3615 | 46.7806 | 5654 | 27 | 5868 | 3695 | 3649 | 98.7551 | |
| gduggal-snapvard | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 75.9223 | 95.2075 | 63.1339 | 85.1688 | 1927 | 97 | 1942 | 1134 | 22 | 1.9400 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 75.9237 | 62.4049 | 96.9194 | 87.0711 | 410 | 247 | 409 | 13 | 4 | 30.7692 | |
| qzeng-custom | INDEL | I6_15 | HG002compoundhet | * | 75.9258 | 69.2571 | 84.0157 | 36.6439 | 6078 | 2698 | 5992 | 1140 | 884 | 77.5439 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 75.9259 | 61.5000 | 99.1935 | 60.2564 | 123 | 77 | 123 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 75.9280 | 67.6190 | 86.5649 | 44.3027 | 497 | 238 | 567 | 88 | 88 | 100.0000 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 75.9304 | 73.7693 | 78.2218 | 69.0738 | 48209 | 17142 | 62008 | 17264 | 16584 | 96.0612 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 75.9304 | 73.7693 | 78.2218 | 69.0738 | 48209 | 17142 | 62008 | 17264 | 16584 | 96.0612 | |
| anovak-vg | INDEL | D6_15 | * | homalt | 75.9353 | 71.8780 | 80.4782 | 54.2097 | 4547 | 1779 | 4679 | 1135 | 811 | 71.4537 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 75.9388 | 61.7232 | 98.6618 | 39.1505 | 8661 | 5371 | 8184 | 111 | 101 | 90.9910 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m1_e0 | * | 75.9428 | 62.2530 | 97.3510 | 93.4867 | 315 | 191 | 441 | 12 | 8 | 66.6667 | |
| anovak-vg | SNP | tv | map_l150_m2_e0 | het | 75.9484 | 90.6371 | 65.3567 | 81.6125 | 6573 | 679 | 6569 | 3482 | 815 | 23.4061 | |
| qzeng-custom | INDEL | D16_PLUS | HG002compoundhet | * | 75.9486 | 81.4609 | 71.1351 | 32.7367 | 1907 | 434 | 2112 | 857 | 326 | 38.0397 | |
| gduggal-snapfb | INDEL | * | map_l150_m2_e1 | hetalt | 75.9494 | 65.2174 | 90.9091 | 96.8300 | 15 | 8 | 10 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 75.9578 | 85.7513 | 68.1720 | 92.2629 | 331 | 55 | 317 | 148 | 24 | 16.2162 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 75.9608 | 97.6331 | 62.1622 | 84.2553 | 165 | 4 | 69 | 42 | 41 | 97.6190 | |
| anovak-vg | SNP | ti | map_l150_m2_e0 | het | 75.9641 | 89.7213 | 65.8649 | 81.6317 | 11557 | 1324 | 11473 | 5946 | 1327 | 22.3175 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 75.9688 | 61.9247 | 98.2517 | 67.2018 | 296 | 182 | 281 | 5 | 5 | 100.0000 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 75.9729 | 97.1161 | 62.3900 | 67.1535 | 1347 | 40 | 1347 | 812 | 4 | 0.4926 | |
| gduggal-bwaplat | SNP | * | map_l100_m2_e0 | homalt | 75.9766 | 61.2688 | 99.9763 | 72.3553 | 16863 | 10660 | 16851 | 4 | 4 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 75.9768 | 87.8450 | 66.9339 | 67.8314 | 1496 | 207 | 1670 | 825 | 122 | 14.7879 | |
| anovak-vg | SNP | * | map_l150_m2_e0 | het | 75.9821 | 90.0512 | 65.7151 | 81.6508 | 18130 | 2003 | 17933 | 9356 | 2121 | 22.6699 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 75.9907 | 61.6646 | 98.9879 | 43.7998 | 489 | 304 | 489 | 5 | 5 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 75.9910 | 61.9565 | 98.2456 | 60.6897 | 57 | 35 | 56 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | * | map_l150_m0_e0 | het | 75.9917 | 64.6851 | 92.0882 | 93.9068 | 5136 | 2804 | 5098 | 438 | 367 | 83.7900 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m2_e0 | * | 75.9931 | 69.8413 | 83.3333 | 84.8527 | 88 | 38 | 90 | 18 | 12 | 66.6667 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 76.0000 | 73.0769 | 79.1667 | 96.7480 | 19 | 7 | 19 | 5 | 1 | 20.0000 | |
| ckim-isaac | SNP | ti | map_l100_m2_e1 | hetalt | 76.0000 | 61.2903 | 100.0000 | 74.3243 | 19 | 12 | 19 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 76.0027 | 83.0403 | 70.0649 | 36.4124 | 8642 | 1765 | 11127 | 4754 | 3440 | 72.3601 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 76.0030 | 61.7352 | 98.8481 | 36.6332 | 1352 | 838 | 1373 | 16 | 16 | 100.0000 | |
| gduggal-snapfb | INDEL | * | HG002compoundhet | hetalt | 76.0060 | 64.4003 | 92.7141 | 74.7872 | 16216 | 8964 | 5739 | 451 | 378 | 83.8137 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 76.0161 | 83.1560 | 70.0052 | 27.1233 | 469 | 95 | 5340 | 2288 | 2284 | 99.8252 | |
| anovak-vg | SNP | ti | map_l150_m2_e1 | het | 76.0299 | 89.7810 | 65.9316 | 81.6800 | 11685 | 1330 | 11600 | 5994 | 1333 | 22.2389 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 76.0331 | 67.0590 | 87.7802 | 43.4475 | 11850 | 5821 | 12686 | 1766 | 1744 | 98.7542 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 76.0331 | 67.0590 | 87.7802 | 43.4475 | 11850 | 5821 | 12686 | 1766 | 1744 | 98.7542 | |
| gduggal-bwaplat | SNP | ti | map_l125_m2_e1 | * | 76.0359 | 61.5656 | 99.3981 | 86.9873 | 18820 | 11749 | 18827 | 114 | 34 | 29.8246 | |
| anovak-vg | INDEL | D6_15 | map_l100_m1_e0 | het | 76.0494 | 78.5714 | 73.6842 | 85.5238 | 99 | 27 | 112 | 40 | 23 | 57.5000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 76.0523 | 82.0000 | 70.9091 | 81.7276 | 41 | 9 | 39 | 16 | 13 | 81.2500 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m2_e1 | het | 76.0534 | 62.7760 | 96.4539 | 95.2493 | 199 | 118 | 272 | 10 | 6 | 60.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m2_e0 | * | 76.0546 | 62.4277 | 97.2917 | 93.6809 | 324 | 195 | 467 | 13 | 8 | 61.5385 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 76.0563 | 61.3636 | 100.0000 | 74.2857 | 27 | 17 | 27 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 76.0563 | 65.8537 | 90.0000 | 61.0390 | 27 | 14 | 27 | 3 | 3 | 100.0000 | |