PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43451-43500 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 75.0000 | 64.2857 | 90.0000 | 94.4751 | 9 | 5 | 9 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 96.4286 | 3 | 2 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_l150_m0_e0 | het | 75.0000 | 75.0000 | 75.0000 | 96.8254 | 3 | 1 | 3 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l250_m1_e0 | het | 75.0000 | 75.0000 | 75.0000 | 97.2603 | 3 | 1 | 3 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | * | map_l250_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 94.6429 | 3 | 2 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l250_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 94.6429 | 3 | 2 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | map_l250_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 91.4286 | 3 | 2 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | map_l250_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 91.4286 | 3 | 2 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l250_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 94.6429 | 3 | 2 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l250_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 94.6429 | 3 | 2 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | * | func_cds | hetalt | 75.0000 | 60.0000 | 100.0000 | 33.3333 | 3 | 2 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 75.0000 | 60.0000 | 100.0000 | 99.6055 | 3 | 2 | 4 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l250_m2_e0 | het | 75.0000 | 60.0000 | 100.0000 | 97.1963 | 3 | 2 | 3 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l250_m2_e1 | het | 75.0000 | 60.0000 | 100.0000 | 97.3451 | 3 | 2 | 3 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 75.0000 | 60.0000 | 100.0000 | 99.7326 | 3 | 2 | 3 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 75.0000 | 92.3077 | 63.1579 | 85.2713 | 12 | 1 | 12 | 7 | 5 | 71.4286 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 75.0000 | 100.0000 | 60.0000 | 96.4789 | 3 | 0 | 3 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 75.0000 | 75.0000 | 75.0000 | 97.9058 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 75.0000 | 100.0000 | 60.0000 | 96.7427 | 6 | 0 | 6 | 4 | 3 | 75.0000 | |
| rpoplin-dv42 | SNP | * | map_l150_m0_e0 | hetalt | 75.0000 | 100.0000 | 60.0000 | 94.1176 | 3 | 0 | 3 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l150_m0_e0 | hetalt | 75.0000 | 100.0000 | 60.0000 | 94.1176 | 3 | 0 | 3 | 2 | 2 | 100.0000 | |
| qzeng-custom | SNP | ti | map_l150_m1_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 91.5094 | 9 | 6 | 9 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l150_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.6230 | 9 | 6 | 9 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l150_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.6829 | 9 | 6 | 9 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l150_m1_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.6829 | 12 | 8 | 12 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l150_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 93.6842 | 12 | 8 | 12 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l150_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 93.7173 | 12 | 8 | 12 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 75.0000 | 75.0000 | 75.0000 | 99.5354 | 3 | 1 | 3 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 75.0000 | 75.0000 | 75.0000 | 99.2579 | 3 | 1 | 3 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 75.0000 | 75.0000 | 75.0000 | 99.2381 | 3 | 1 | 3 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l250_m1_e0 | het | 75.0000 | 100.0000 | 60.0000 | 94.0476 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l250_m2_e0 | het | 75.0000 | 100.0000 | 60.0000 | 95.0495 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l250_m2_e1 | het | 75.0000 | 100.0000 | 60.0000 | 95.0980 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | I6_15 | tech_badpromoters | homalt | 75.0000 | 100.0000 | 60.0000 | 54.5455 | 3 | 0 | 3 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 75.0000 | 100.0000 | 60.0000 | 97.7376 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 75.0000 | 100.0000 | 60.0000 | 97.7376 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l150_m0_e0 | het | 75.0000 | 75.0000 | 75.0000 | 97.4359 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l250_m1_e0 | het | 75.0000 | 75.0000 | 75.0000 | 97.8142 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 75.0000 | 60.0000 | 100.0000 | 99.6774 | 3 | 2 | 3 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | map_l250_m1_e0 | het | 75.0000 | 100.0000 | 60.0000 | 97.2826 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l250_m2_e0 | het | 75.0000 | 100.0000 | 60.0000 | 97.8355 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l250_m2_e1 | het | 75.0000 | 100.0000 | 60.0000 | 97.8632 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 75.0000 | 100.0000 | 60.0000 | 97.7578 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 75.0000 | 100.0000 | 60.0000 | 97.7578 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l150_m0_e0 | het | 75.0000 | 75.0000 | 75.0000 | 97.5309 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l250_m1_e0 | het | 75.0000 | 75.0000 | 75.0000 | 97.8610 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l250_m1_e0 | het | 75.0000 | 100.0000 | 60.0000 | 97.0930 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l250_m2_e0 | het | 75.0000 | 100.0000 | 60.0000 | 97.6526 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l250_m2_e1 | het | 75.0000 | 100.0000 | 60.0000 | 97.6852 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l150_m0_e0 | * | 75.0000 | 75.0000 | 75.0000 | 98.1221 | 3 | 1 | 3 | 1 | 0 | 0.0000 | |