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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 853 854 855 856 857 858 859 860 861 ... 1720 1721 » 42801-42850 / 86044 show all
anovak-vg	INDEL	*	map_l150_m2_e1	*	72.7945	74.6352	71.0425	90.5099	1074	365	1104	450	242	53.7778
anovak-vg	INDEL	*	HG002complexvar	*	72.8155	71.0364	74.6860	53.4026	54654	22284	56069	19004	16560	87.1395
ndellapenna-hhga	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	72.8176	66.8723	79.9231	50.7780	1843	913	1871	470	429	91.2766
jmaeng-gatk	SNP	tv	map_l250_m2_e1	het	72.8186	59.0331	95.0041	96.9764	1160	805	1160	61	1	1.6393
gduggal-bwafb	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	hetalt	72.8203	57.4281	99.4845	34.4595	719	533	193	1	1	100.0000
ckim-isaac	INDEL	D1_5	map_l125_m2_e0	homalt	72.8223	57.4176	99.5238	81.1321	209	155	209	1	1	100.0000
jmaeng-gatk	SNP	ti	map_l250_m1_e0	het	72.8227	58.4569	96.5498	96.7644	1735	1233	1735	62	7	11.2903
gduggal-bwafb	INDEL	D16_PLUS	map_l100_m2_e0	het	72.8311	60.4167	91.6667	82.9384	29	19	33	3	3	100.0000
bgallagher-sentieon	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_51to200	hetalt	72.8368	57.5419	99.2063	28.0000	103	76	125	1	1	100.0000
qzeng-custom	SNP	ti	map_l250_m1_e0	homalt	72.8401	57.4984	99.3478	88.5158	924	683	914	6	6	100.0000
ckim-isaac	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	*	72.8440	62.9842	86.3636	38.2927	439	258	437	69	65	94.2029
jmaeng-gatk	SNP	*	map_l150_m2_e1	homalt	72.8475	57.3011	99.9705	80.8330	6777	5050	6777	2	2	100.0000
ltrigg-rtg2	SNP	tv	lowcmp_SimpleRepeat_diTR_51to200	het	72.8477	64.7059	83.3333	95.1613	11	6	10	2	1	50.0000
anovak-vg	INDEL	*	map_l125_m2_e0	*	72.8494	74.4991	71.2712	87.8407	1636	560	1682	678	383	56.4897
ghariani-varprowl	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	72.8517	89.6171	61.3706	74.5275	1381	160	1406	885	863	97.5141
gduggal-bwaplat	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	72.8617	57.7406	98.7124	51.8595	690	505	690	9	9	100.0000
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	72.8639	81.3378	65.9890	43.5053	2663	611	5875	3028	2874	94.9141
gduggal-snapfb	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	72.8692	95.0543	59.0803	78.2168	27292	1420	27789	19247	483	2.5095
gduggal-snapfb	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	72.8692	95.0543	59.0803	78.2168	27292	1420	27789	19247	483	2.5095
egarrison-hhga	INDEL	D6_15	map_siren	hetalt	72.8695	58.5859	96.3636	78.5992	58	41	53	2	1	50.0000
anovak-vg	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	72.8701	70.9790	74.8646	68.2103	67039	27410	79629	26735	20426	76.4017
anovak-vg	INDEL	I1_5	tech_badpromoters	homalt	72.8745	69.2308	76.9231	40.9091	9	4	10	3	2	66.6667
ckim-gatk	SNP	ti	map_l150_m0_e0	*	72.8820	58.1733	97.5459	92.0553	4573	3288	4571	115	19	16.5217
gduggal-bwaplat	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	72.8837	58.1081	97.7358	91.6876	258	186	259	6	5	83.3333
egarrison-hhga	INDEL	I16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	72.8872	59.3023	94.5455	73.4300	51	35	52	3	2	66.6667
gduggal-bwaplat	SNP	ti	map_l100_m0_e0	*	72.8908	57.5582	99.3581	86.0136	12531	9240	12537	81	26	32.0988
egarrison-hhga	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	72.8990	58.1328	97.7209	46.5971	2223	1601	2101	49	43	87.7551
anovak-vg	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	72.9057	90.7801	60.9122	43.2513	512	52	1616	1037	988	95.2748
mlin-fermikit	SNP	*	lowcmp_SimpleRepeat_quadTR_51to200	*	72.9167	73.4266	72.4138	93.7392	105	38	105	40	29	72.5000
gduggal-bwaplat	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	het	72.9167	57.3770	100.0000	85.5967	35	26	35	0	0
ndellapenna-hhga	INDEL	D16_PLUS	map_siren	hetalt	72.9211	61.2903	90.0000	77.2727	19	12	18	2	0	0.0000
gduggal-bwaplat	SNP	tv	map_l150_m2_e1	het	72.9246	57.6211	99.2964	93.0175	4234	3114	4234	30	5	16.6667
ckim-gatk	SNP	ti	map_l250_m1_e0	het	72.9254	58.6253	96.4523	96.6462	1740	1228	1740	64	8	12.5000
ciseli-custom	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	72.9289	95.5040	58.9859	74.2486	1933	91	1966	1367	32	2.3409
asubramanian-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_51to200	hetalt	72.9300	58.6592	96.3768	29.2308	105	74	133	5	4	80.0000
gduggal-snapfb	INDEL	I6_15	HG002complexvar	*	72.9303	63.6686	85.3453	43.1989	3051	1741	3040	522	491	94.0613
qzeng-custom	INDEL	I16_PLUS	HG002compoundhet	*	72.9335	66.6356	80.5461	47.8493	1428	715	1416	342	260	76.0234
eyeh-varpipe	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	72.9338	86.2903	63.1579	90.1262	107	17	84	49	4	8.1633
mlin-fermikit	SNP	*	map_l100_m2_e1	*	72.9339	60.8681	90.9660	55.6863	45491	29246	45483	4517	3972	87.9345
ciseli-custom	INDEL	*	map_l100_m1_e0	het	72.9400	70.5593	75.4869	88.5098	1577	658	1589	516	305	59.1085
ghariani-varprowl	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	72.9446	66.2921	81.0811	71.4286	59	30	60	14	14	100.0000
ckim-isaac	INDEL	*	map_l125_m1_e0	homalt	72.9473	57.6503	99.2941	79.6358	422	310	422	3	1	33.3333
gduggal-bwaplat	INDEL	D1_5	map_l125_m2_e0	homalt	72.9494	57.4176	100.0000	91.2000	209	155	209	0	0
anovak-vg	INDEL	D1_5	map_l250_m2_e0	*	72.9497	74.4565	71.5026	96.2008	137	47	138	55	24	43.6364
mlin-fermikit	INDEL	I1_5	map_l100_m2_e1	*	72.9543	60.7168	91.3700	78.5863	847	548	847	80	69	86.2500
ndellapenna-hhga	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	72.9555	67.4217	79.4788	54.5797	2649	1280	2684	693	618	89.1775
bgallagher-sentieon	INDEL	D1_5	HG002compoundhet	homalt	72.9560	99.6564	57.5397	87.1560	290	1	290	214	213	99.5327
jpowers-varprowl	INDEL	D16_PLUS	map_siren	het	72.9591	87.1795	62.7273	93.3775	68	10	69	41	36	87.8049
jli-custom	INDEL	*	HG002compoundhet	homalt	72.9600	99.7085	57.5273	84.4270	684	2	684	505	502	99.4059
anovak-vg	INDEL	*	map_l150_m2_e0	*	72.9602	74.8580	71.1564	90.5195	1054	354	1083	439	234	53.3030

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