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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 849 850 851 852 853 854 855 856 857 ... 1720 1721 » 42601-42650 / 86044 show all
gduggal-bwafb	INDEL	I6_15	map_l125_m1_e0	het	72.3404	56.6667	100.0000	88.3721	17	13	20	0	0
gduggal-bwafb	INDEL	I6_15	map_l125_m2_e0	het	72.3404	56.6667	100.0000	90.0498	17	13	20	0	0
gduggal-bwafb	INDEL	I6_15	map_l125_m2_e1	het	72.3404	56.6667	100.0000	90.3382	17	13	20	0	0
gduggal-bwaplat	SNP	ti	map_l100_m2_e0	hetalt	72.3404	56.6667	100.0000	89.8204	17	13	17	0	0
gduggal-bwafb	INDEL	D16_PLUS	map_l100_m0_e0	*	72.3404	60.7143	89.4737	90.1042	17	11	17	2	2	100.0000
ghariani-varprowl	INDEL	*	lowcmp_SimpleRepeat_homopolymer_gt10	het	72.3404	78.1609	67.3267	99.9209	68	19	68	33	18	54.5455
ciseli-custom	INDEL	D1_5	map_l150_m1_e0	het	72.3508	65.5602	80.7107	93.7629	316	166	318	76	19	25.0000
gduggal-bwafb	SNP	*	lowcmp_SimpleRepeat_quadTR_51to200	het	72.3514	82.3529	64.5161	94.3197	84	18	80	44	4	9.0909
ciseli-custom	INDEL	D1_5	map_l125_m0_e0	het	72.3571	66.6667	79.1096	93.4101	230	115	231	61	11	18.0328
mlin-fermikit	INDEL	D1_5	map_l125_m1_e0	homalt	72.3589	71.6332	73.0994	78.0347	250	99	250	92	86	93.4783
astatham-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	het	72.3612	91.8919	59.6774	74.1667	136	12	111	75	74	98.6667
jpowers-varprowl	INDEL	D6_15	map_l100_m0_e0	*	72.3618	69.9029	75.0000	88.7588	72	31	72	24	21	87.5000
ltrigg-rtg1	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	72.3623	57.5758	97.3684	68.0672	38	28	37	1	0	0.0000
ciseli-custom	SNP	tv	map_l150_m0_e0	*	72.3723	66.6267	79.2023	86.0382	2781	1393	2780	730	179	24.5205
ghariani-varprowl	INDEL	I6_15	map_l100_m1_e0	*	72.3810	66.6667	79.1667	87.9093	76	38	76	20	16	80.0000
gduggal-snapfb	INDEL	D6_15	HG002compoundhet	*	72.3856	63.3263	84.4695	30.0529	5719	3312	6592	1212	1198	98.8449
gduggal-bwaplat	INDEL	D1_5	map_l150_m1_e0	*	72.3894	57.0432	99.0315	95.5984	409	308	409	4	1	25.0000
gduggal-snapplat	INDEL	I1_5	func_cds	*	72.3894	69.4444	75.5952	55.4377	125	55	127	41	1	2.4390
gduggal-bwavard	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	72.3907	57.0056	99.1501	60.4038	712	537	700	6	5	83.3333
gduggal-bwavard	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	72.3907	57.0056	99.1501	60.4038	712	537	700	6	5	83.3333
gduggal-bwaplat	INDEL	D6_15	map_l100_m0_e0	*	72.3926	57.2816	98.3333	96.0186	59	44	59	1	0	0.0000
gduggal-bwaplat	INDEL	D1_5	map_l125_m1_e0	homalt	72.3949	56.7335	100.0000	90.7216	198	151	198	0	0
anovak-vg	INDEL	*	map_l250_m2_e0	homalt	72.3983	74.7826	70.1613	95.5950	86	29	87	37	34	91.8919
gduggal-snapvard	INDEL	D6_15	map_l150_m2_e1	*	72.3984	71.7647	73.0435	88.8023	61	24	84	31	20	64.5161
gduggal-snapfb	INDEL	C6_15	HG002complexvar	het	72.4138	75.0000	70.0000	83.0508	3	1	7	3	2	66.6667
ciseli-custom	INDEL	D1_5	map_l150_m2_e1	het	72.4170	65.5172	80.9412	93.9878	342	180	344	81	22	27.1605
mlin-fermikit	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	72.4268	57.1879	98.7375	38.9205	1452	1087	1486	19	19	100.0000
ciseli-custom	INDEL	D1_5	map_l150_m2_e0	het	72.4320	65.5642	80.9069	93.9773	337	177	339	80	21	26.2500
ciseli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	72.4338	76.9090	68.4508	62.7083	2518	756	2788	1285	845	65.7588
gduggal-bwaplat	INDEL	I16_PLUS	*	*	72.4372	57.6760	97.3531	65.4535	3678	2699	3678	100	83	83.0000
anovak-vg	INDEL	*	map_l100_m2_e0	*	72.4393	72.7593	72.1222	84.8313	2687	1006	2763	1068	640	59.9251
mlin-fermikit	SNP	*	map_siren	hetalt	72.4409	56.7901	100.0000	65.9259	46	35	46	0	0
mlin-fermikit	SNP	tv	map_siren	hetalt	72.4409	56.7901	100.0000	65.9259	46	35	46	0	0
ckim-isaac	SNP	*	map_siren	hetalt	72.4409	56.7901	100.0000	72.4551	46	35	46	0	0
ckim-isaac	SNP	tv	map_siren	hetalt	72.4409	56.7901	100.0000	72.4551	46	35	46	0	0
mlin-fermikit	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	72.4419	70.6939	74.2785	64.5876	7121	2952	7026	2433	2324	95.5199
gduggal-snapfb	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	72.4427	98.5075	57.2852	93.2156	462	7	460	343	27	7.8717
gduggal-snapfb	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	72.4442	68.0556	77.4379	54.5217	392	184	405	118	115	97.4576
anovak-vg	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	het	72.4560	79.2319	66.7478	27.2137	557	146	823	410	336	81.9512
ckim-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	het	72.4655	91.2162	60.1093	74.5125	135	13	110	73	72	98.6301
cchapple-custom	SNP	tv	lowcmp_SimpleRepeat_diTR_51to200	het	72.4706	64.7059	82.3529	96.0465	11	6	14	3	0	0.0000
anovak-vg	SNP	ti	map_l250_m0_e0	*	72.4774	77.4453	68.1085	95.7045	1061	309	1055	494	111	22.4696
mlin-fermikit	INDEL	I1_5	map_l100_m1_e0	*	72.4899	60.1195	91.2698	75.8091	805	534	805	77	67	87.0130
ckim-isaac	INDEL	D1_5	map_l125_m1_e0	homalt	72.4954	57.0201	99.5000	79.8184	199	150	199	1	1	100.0000
eyeh-varpipe	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	72.4961	91.2859	60.1211	52.5391	16583	1583	21245	14092	13777	97.7647
eyeh-varpipe	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	72.4961	91.2859	60.1211	52.5391	16583	1583	21245	14092	13777	97.7647
anovak-vg	INDEL	*	map_l125_m1_e0	*	72.5033	74.1813	70.8995	87.0946	1563	544	1608	660	372	56.3636
eyeh-varpipe	INDEL	I6_15	map_l125_m1_e0	het	72.5049	63.3333	84.7826	81.8182	19	11	39	7	5	71.4286
eyeh-varpipe	INDEL	I6_15	map_l125_m2_e0	het	72.5049	63.3333	84.7826	83.2117	19	11	39	7	5	71.4286
eyeh-varpipe	INDEL	I6_15	map_l125_m2_e1	het	72.5049	63.3333	84.7826	83.5125	19	11	39	7	5	71.4286

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