PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
41251-41300 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | I6_15 | map_l125_m2_e0 | het | 66.6667 | 50.0000 | 100.0000 | 97.2171 | 15 | 15 | 15 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l125_m2_e1 | het | 66.6667 | 50.0000 | 100.0000 | 97.2875 | 15 | 15 | 15 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m2_e1 | het | 66.6667 | 50.0000 | 100.0000 | 98.2906 | 8 | 8 | 8 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m2_e1 | homalt | 66.6667 | 50.0000 | 100.0000 | 96.5217 | 4 | 4 | 4 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 66.6828 | 57.1125 | 80.1061 | 51.0601 | 538 | 404 | 906 | 225 | 212 | 94.2222 | |
| gduggal-snapvard | INDEL | D6_15 | HG002complexvar | * | 66.6908 | 61.3353 | 73.0708 | 52.3301 | 3252 | 2050 | 3229 | 1190 | 878 | 73.7815 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 66.7081 | 53.2787 | 89.1892 | 86.8093 | 65 | 57 | 66 | 8 | 8 | 100.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 66.7149 | 82.5790 | 55.9638 | 44.4510 | 1332 | 281 | 5818 | 4578 | 4118 | 89.9519 | |
| mlin-fermikit | INDEL | I1_5 | map_l125_m1_e0 | * | 66.7171 | 53.1325 | 89.6341 | 77.6871 | 441 | 389 | 441 | 51 | 46 | 90.1961 | |
| eyeh-varpipe | INDEL | D1_5 | HG002complexvar | hetalt | 66.7172 | 51.5533 | 94.5191 | 75.2098 | 697 | 655 | 1759 | 102 | 101 | 99.0196 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 66.7240 | 96.5130 | 50.9868 | 39.6443 | 9189 | 332 | 12943 | 12442 | 12249 | 98.4488 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 66.7282 | 78.5285 | 58.0110 | 55.6155 | 1046 | 286 | 1050 | 760 | 754 | 99.2105 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 66.7314 | 81.9672 | 56.2718 | 32.0710 | 100 | 22 | 323 | 251 | 223 | 88.8446 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 66.7317 | 51.4286 | 95.0000 | 93.4641 | 18 | 17 | 19 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | map_l150_m1_e0 | * | 66.7357 | 50.1924 | 99.5456 | 91.4813 | 5477 | 5435 | 5477 | 25 | 5 | 20.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 66.7366 | 54.6392 | 85.7143 | 3.4483 | 53 | 44 | 24 | 4 | 4 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l100_m0_e0 | het | 66.7367 | 51.2690 | 95.5696 | 76.0968 | 303 | 288 | 302 | 14 | 4 | 28.5714 | |
| gduggal-snapfb | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 66.7373 | 98.5222 | 50.4586 | 77.9321 | 3200 | 48 | 3246 | 3187 | 55 | 1.7258 | |
| ciseli-custom | INDEL | D1_5 | map_l250_m2_e1 | * | 66.7396 | 61.6216 | 72.7848 | 97.3275 | 114 | 71 | 115 | 43 | 14 | 32.5581 | |
| ckim-isaac | SNP | * | map_l250_m1_e0 | het | 66.7411 | 50.2629 | 99.2937 | 91.8401 | 2390 | 2365 | 2390 | 17 | 1 | 5.8824 | |
| ciseli-custom | INDEL | D1_5 | map_l250_m1_e0 | * | 66.7446 | 61.4035 | 73.1034 | 97.1877 | 105 | 66 | 106 | 39 | 12 | 30.7692 | |
| jpowers-varprowl | INDEL | D6_15 | map_l100_m2_e0 | * | 66.7463 | 62.8788 | 71.1207 | 86.3369 | 166 | 98 | 165 | 67 | 64 | 95.5224 | |
| anovak-vg | INDEL | D1_5 | map_l250_m0_e0 | * | 66.7485 | 69.5652 | 64.1509 | 98.1232 | 32 | 14 | 34 | 19 | 9 | 47.3684 | |
| ciseli-custom | INDEL | * | map_l150_m1_e0 | het | 66.7585 | 62.9240 | 71.0907 | 93.2928 | 538 | 317 | 541 | 220 | 129 | 58.6364 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 66.7890 | 70.2703 | 63.6364 | 84.0116 | 52 | 22 | 35 | 20 | 5 | 25.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_siren | het | 66.7957 | 57.6923 | 79.3103 | 83.8440 | 45 | 33 | 46 | 12 | 5 | 41.6667 | |
| ckim-isaac | SNP | ti | map_l250_m2_e0 | * | 66.8081 | 50.2995 | 99.4473 | 90.8038 | 2519 | 2489 | 2519 | 14 | 3 | 21.4286 | |
| anovak-vg | INDEL | * | map_l250_m1_e0 | * | 66.8127 | 69.1803 | 64.6018 | 96.2450 | 211 | 94 | 219 | 120 | 61 | 50.8333 | |
| ckim-isaac | SNP | * | map_l125_m1_e0 | homalt | 66.8137 | 50.1804 | 99.9411 | 61.4585 | 8483 | 8422 | 8483 | 5 | 5 | 100.0000 | |
| ckim-vqsr | SNP | ti | map_l150_m2_e0 | * | 66.8194 | 50.4631 | 98.8632 | 91.2397 | 10351 | 10161 | 10349 | 119 | 3 | 2.5210 | |
| ciseli-custom | INDEL | * | map_l125_m1_e0 | homalt | 66.8206 | 59.2896 | 76.5432 | 87.7564 | 434 | 298 | 434 | 133 | 104 | 78.1955 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 66.8212 | 95.0125 | 51.5313 | 71.7775 | 381 | 20 | 387 | 364 | 344 | 94.5055 | |
| mlin-fermikit | SNP | ti | map_l125_m2_e0 | homalt | 66.8459 | 58.0120 | 78.8535 | 57.3303 | 6589 | 4769 | 6589 | 1767 | 1683 | 95.2462 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 66.8472 | 50.8696 | 97.4576 | 61.1842 | 117 | 113 | 115 | 3 | 2 | 66.6667 | |
| ckim-isaac | SNP | ti | map_l250_m2_e1 | * | 66.8585 | 50.3546 | 99.4553 | 90.8557 | 2556 | 2520 | 2556 | 14 | 3 | 21.4286 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 66.8599 | 89.2948 | 53.4347 | 70.0637 | 1760 | 211 | 1758 | 1532 | 1441 | 94.0601 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 66.8599 | 89.2948 | 53.4347 | 70.0637 | 1760 | 211 | 1758 | 1532 | 1441 | 94.0601 | |
| gduggal-snapfb | INDEL | I6_15 | * | hetalt | 66.8619 | 57.6892 | 79.5031 | 50.4107 | 4933 | 3618 | 1152 | 297 | 287 | 96.6330 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 66.8635 | 56.6333 | 81.6046 | 52.1656 | 2207 | 1690 | 1424 | 321 | 304 | 94.7040 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 66.8693 | 52.6316 | 91.6667 | 69.2308 | 10 | 9 | 11 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l150_m2_e0 | * | 66.8704 | 54.9148 | 85.4806 | 82.9140 | 419 | 344 | 418 | 71 | 63 | 88.7324 | |
| ciseli-custom | INDEL | * | map_l125_m0_e0 | het | 66.8718 | 63.0324 | 71.2092 | 93.2956 | 370 | 217 | 371 | 150 | 76 | 50.6667 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 66.8725 | 51.0638 | 96.8586 | 35.5002 | 288 | 276 | 1480 | 48 | 47 | 97.9167 | |
| qzeng-custom | INDEL | I6_15 | map_l125_m2_e0 | * | 66.8790 | 66.0377 | 67.7419 | 87.6000 | 35 | 18 | 84 | 40 | 3 | 7.5000 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 66.9020 | 71.8258 | 62.6099 | 52.3713 | 1963 | 770 | 2207 | 1318 | 760 | 57.6631 | |
| ckim-vqsr | SNP | ti | map_l150_m2_e1 | * | 66.9029 | 50.5622 | 98.8488 | 91.2579 | 10478 | 10245 | 10476 | 122 | 3 | 2.4590 | |
| ciseli-custom | INDEL | D16_PLUS | * | homalt | 66.9047 | 89.8936 | 53.2793 | 59.6184 | 1521 | 171 | 1511 | 1325 | 1241 | 93.6604 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 66.9076 | 92.2101 | 52.5013 | 83.8765 | 1018 | 86 | 1039 | 940 | 100 | 10.6383 | |
| ciseli-custom | INDEL | * | map_l150_m2_e0 | het | 66.9093 | 62.8035 | 71.5895 | 93.6451 | 569 | 337 | 572 | 227 | 132 | 58.1498 | |
| gduggal-snapvard | INDEL | D6_15 | map_l100_m2_e0 | * | 66.9120 | 61.7424 | 73.0263 | 82.9213 | 163 | 101 | 222 | 82 | 58 | 70.7317 | |