PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40801-40850 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 66.6667 | 50.0000 | 100.0000 | 99.7319 | 1 | 1 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 66.6667 | 50.0000 | 100.0000 | 99.0521 | 2 | 2 | 2 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 84.6154 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | func_cds | homalt | 66.6667 | 50.0000 | 100.0000 | 85.7143 | 1 | 1 | 1 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.6667 | 1 | 1 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 66.6667 | 50.0000 | 100.0000 | 96.7742 | 2 | 2 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 66.6667 | 50.0000 | 100.0000 | 96.7033 | 2 | 2 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 91.6667 | 2 | 2 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 94.1176 | 1 | 1 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 66.6667 | 50.0000 | 100.0000 | 92.0000 | 2 | 2 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 66.6667 | 50.0000 | 100.0000 | 92.8571 | 1 | 1 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 66.6667 | 50.0000 | 100.0000 | 88.8889 | 1 | 1 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 66.6667 | 50.0000 | 100.0000 | 75.0000 | 1 | 1 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l100_m0_e0 | * | 66.6667 | 54.5455 | 85.7143 | 78.1250 | 6 | 5 | 6 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 90.0000 | 1 | 1 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 88.8889 | 1 | 1 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m1_e0 | * | 66.6667 | 54.5455 | 85.7143 | 85.4167 | 6 | 5 | 6 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m2_e0 | * | 66.6667 | 54.5455 | 85.7143 | 86.7925 | 6 | 5 | 6 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m2_e1 | * | 66.6667 | 54.5455 | 85.7143 | 86.7925 | 6 | 5 | 6 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 99.1453 | 1 | 1 | 1 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 66.6667 | 50.0000 | 100.0000 | 66.6667 | 1 | 1 | 2 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 66.6667 | 50.0000 | 100.0000 | 85.7143 | 2 | 2 | 2 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 94.1176 | 1 | 1 | 1 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 94.4444 | 1 | 1 | 1 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 94.4444 | 1 | 1 | 1 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | map_l250_m1_e0 | * | 66.6667 | 100.0000 | 50.0000 | 99.3197 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l250_m1_e0 | het | 66.6667 | 100.0000 | 50.0000 | 98.8571 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l250_m2_e0 | * | 66.6667 | 100.0000 | 50.0000 | 99.3651 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l250_m2_e0 | het | 66.6667 | 100.0000 | 50.0000 | 98.9362 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l250_m2_e1 | * | 66.6667 | 100.0000 | 50.0000 | 99.3769 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l250_m2_e1 | het | 66.6667 | 100.0000 | 50.0000 | 98.9637 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 66.6667 | 100.0000 | 50.0000 | 98.3607 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l125_m0_e0 | het | 66.6667 | 66.6667 | 66.6667 | 96.8085 | 6 | 3 | 6 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m0_e0 | het | 66.6667 | 75.0000 | 60.0000 | 97.9167 | 3 | 1 | 3 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l250_m1_e0 | * | 66.6667 | 57.1429 | 80.0000 | 98.7277 | 4 | 3 | 4 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l250_m2_e0 | het | 66.6667 | 60.0000 | 75.0000 | 98.7730 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l250_m2_e1 | het | 66.6667 | 60.0000 | 75.0000 | 98.8304 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l150_m0_e0 | het | 66.6667 | 50.0000 | 100.0000 | 94.2857 | 2 | 2 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l250_m1_e0 | het | 66.6667 | 50.0000 | 100.0000 | 95.8333 | 2 | 2 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 50.0000 | 100.0000 | 95.0000 | 1 | 1 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 50.0000 | 100.0000 | 92.8571 | 1 | 1 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 66.6667 | 50.0000 | 100.0000 | 99.7379 | 2 | 2 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 66.6667 | 50.0000 | 100.0000 | 96.9388 | 2 | 2 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 66.6667 | 50.0000 | 100.0000 | 96.8750 | 2 | 2 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 92.0000 | 2 | 2 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 94.1176 | 1 | 1 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 66.6667 | 50.0000 | 100.0000 | 90.0000 | 2 | 2 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 66.6667 | 50.0000 | 100.0000 | 90.9091 | 1 | 1 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 66.6667 | 50.0000 | 100.0000 | 87.5000 | 1 | 1 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 66.6667 | 50.0000 | 100.0000 | 75.0000 | 1 | 1 | 1 | 0 | 0 | ||