PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40701-40750 / 86044 show all | |||||||||||||||
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 66.6667 | 75.0000 | 60.0000 | 96.9605 | 12 | 4 | 12 | 8 | 4 | 50.0000 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 50.0000 | 100.0000 | 98.8372 | 1 | 1 | 1 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 66.6667 | 100.0000 | 50.0000 | 97.6190 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 66.6667 | 100.0000 | 50.0000 | 96.2264 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 66.6667 | 50.0000 | 100.0000 | 99.8190 | 2 | 2 | 2 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 66.6667 | 66.6667 | 66.6667 | 99.5739 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 66.6667 | 56.2500 | 81.8182 | 99.9089 | 9 | 7 | 9 | 2 | 0 | 0.0000 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 66.6667 | 100.0000 | 50.0000 | 80.0000 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 66.6667 | 62.5000 | 71.4286 | 97.8261 | 5 | 3 | 5 | 2 | 1 | 50.0000 | |
| qzeng-custom | SNP | ti | map_l125_m0_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 95.0000 | 4 | 4 | 4 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 66.6667 | 50.0000 | 100.0000 | 98.4615 | 1 | 1 | 1 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 95.0000 | 1 | 1 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 66.6667 | 50.0000 | 100.0000 | 99.9118 | 1 | 1 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 66.6667 | 50.0000 | 100.0000 | 99.6198 | 1 | 1 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_l250_m0_e0 | * | 66.6667 | 100.0000 | 50.0000 | 98.1132 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 50.0000 | 100.0000 | 97.0588 | 1 | 1 | 1 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 95.4545 | 2 | 2 | 2 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 66.6667 | 100.0000 | 50.0000 | 71.4286 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 50.0000 | 100.0000 | 95.6522 | 1 | 1 | 1 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 93.1034 | 2 | 2 | 2 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 95.4545 | 2 | 2 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | * | decoy | * | 66.6667 | 100.0000 | 50.0000 | 99.9491 | 10 | 0 | 7 | 7 | 0 | 0.0000 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 66.6667 | 50.0000 | 100.0000 | 99.5964 | 2 | 2 | 4 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 66.6667 | 100.0000 | 50.0000 | 96.8750 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 88.8889 | 2 | 2 | 2 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 66.6667 | 66.6667 | 66.6667 | 97.8873 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 66.6667 | 50.0000 | 100.0000 | 98.7805 | 1 | 1 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 66.6667 | 100.0000 | 50.0000 | 95.8333 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 66.6667 | 56.2500 | 81.8182 | 99.8908 | 9 | 7 | 9 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | * | map_l100_m0_e0 | hetalt | 66.6667 | 51.5152 | 94.4444 | 86.6667 | 17 | 16 | 17 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 94.2308 | 3 | 3 | 3 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | map_l250_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.0000 | 3 | 3 | 3 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | map_l250_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.2025 | 3 | 3 | 3 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 99.1968 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 66.6667 | 100.0000 | 50.0000 | 98.6711 | 2 | 0 | 2 | 2 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 99.1489 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 66.6667 | 100.0000 | 50.0000 | 98.6532 | 2 | 0 | 2 | 2 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l125_m0_e0 | hetalt | 66.6667 | 100.0000 | 50.0000 | 83.3333 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l125_m2_e0 | het | 66.6667 | 70.0000 | 63.6364 | 93.7500 | 14 | 6 | 14 | 8 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l150_m1_e0 | hetalt | 66.6667 | 100.0000 | 50.0000 | 75.0000 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l150_m2_e0 | hetalt | 66.6667 | 100.0000 | 50.0000 | 75.0000 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_siren | hetalt | 66.6667 | 51.6129 | 94.1176 | 83.1683 | 16 | 15 | 16 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 66.6667 | 100.0000 | 50.0000 | 99.1667 | 2 | 0 | 2 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 90.4110 | 7 | 7 | 7 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 95.6522 | 1 | 1 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 95.3488 | 4 | 4 | 4 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_l250_m2_e0 | homalt | 66.6667 | 61.6667 | 72.5490 | 90.0391 | 37 | 23 | 37 | 14 | 14 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m2_e1 | homalt | 66.6667 | 61.6667 | 72.5490 | 90.4315 | 37 | 23 | 37 | 14 | 14 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | tech_badpromoters | hetalt | 66.6667 | 50.0000 | 100.0000 | 0.0000 | 1 | 1 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | func_cds | hetalt | 66.6667 | 50.0000 | 100.0000 | 80.0000 | 1 | 1 | 1 | 0 | 0 | ||