PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40601-40650 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | I16_PLUS | map_l250_m2_e1 | * | 66.6667 | 100.0000 | 50.0000 | 95.9184 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l250_m2_e1 | het | 66.6667 | 100.0000 | 50.0000 | 95.3488 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l150_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 93.1034 | 2 | 2 | 2 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | map_l150_m2_e1 | het | 66.6667 | 68.7500 | 64.7059 | 96.1625 | 11 | 5 | 11 | 6 | 5 | 83.3333 | |
| ghariani-varprowl | INDEL | I6_15 | map_l250_m0_e0 | * | 66.6667 | 100.0000 | 50.0000 | 98.5185 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 100.0000 | 50.0000 | 95.0000 | 2 | 0 | 2 | 2 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 66.6667 | 66.6667 | 66.6667 | 98.9865 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l250_m0_e0 | * | 66.6667 | 100.0000 | 50.0000 | 99.7392 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l250_m0_e0 | het | 66.6667 | 100.0000 | 50.0000 | 99.5565 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l250_m1_e0 | * | 66.6667 | 75.0000 | 60.0000 | 99.5155 | 3 | 1 | 3 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 66.6667 | 50.0000 | 100.0000 | 99.7468 | 1 | 1 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 66.6667 | 50.0000 | 100.0000 | 99.7375 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 66.6667 | 100.0000 | 50.0000 | 83.3333 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 66.6667 | 100.0000 | 50.0000 | 60.0000 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | * | map_l125_m0_e0 | hetalt | 66.6667 | 66.6667 | 66.6667 | 90.8163 | 6 | 3 | 6 | 3 | 3 | 100.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 66.6667 | 66.6667 | 66.6667 | 88.4615 | 4 | 2 | 4 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 66.6667 | 100.0000 | 50.0000 | 71.4286 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 66.6667 | 100.0000 | 50.0000 | 0.0000 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 66.6667 | 100.0000 | 50.0000 | 83.3333 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 66.6667 | 100.0000 | 50.0000 | 60.0000 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | map_l125_m0_e0 | hetalt | 66.6667 | 66.6667 | 66.6667 | 90.8163 | 6 | 3 | 6 | 3 | 3 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 66.6667 | 100.0000 | 50.0000 | 94.9153 | 4 | 0 | 3 | 3 | 1 | 33.3333 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 66.6667 | 100.0000 | 50.0000 | 97.0149 | 2 | 0 | 2 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 66.6667 | 100.0000 | 50.0000 | 97.0370 | 2 | 0 | 2 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l100_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 89.0909 | 6 | 6 | 6 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l125_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 92.5000 | 3 | 3 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l150_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 93.7500 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 66.6667 | 66.6667 | 66.6667 | 75.0000 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 66.6667 | 66.6667 | 66.6667 | 78.5714 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 66.6667 | 66.6667 | 66.6667 | 78.5714 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 66.6667 | 100.0000 | 50.0000 | 92.1569 | 6 | 0 | 6 | 6 | 2 | 33.3333 | |
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 66.6667 | 100.0000 | 50.0000 | 97.8261 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 66.6667 | 50.0000 | 100.0000 | 98.6486 | 1 | 1 | 1 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 99.5204 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 99.5062 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 66.6667 | 80.0000 | 57.1429 | 95.0355 | 4 | 1 | 4 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.2963 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 66.6667 | 50.0000 | 100.0000 | 98.5294 | 2 | 2 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l125_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 95.0617 | 6 | 6 | 4 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 98.8131 | 1 | 0 | 2 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 98.7805 | 1 | 0 | 2 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l250_m0_e0 | * | 66.6667 | 100.0000 | 50.0000 | 99.7452 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l250_m0_e0 | het | 66.6667 | 100.0000 | 50.0000 | 99.5192 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l250_m1_e0 | het | 66.6667 | 100.0000 | 50.0000 | 98.6577 | 3 | 0 | 4 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l250_m2_e0 | het | 66.6667 | 100.0000 | 50.0000 | 98.7362 | 3 | 0 | 4 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l250_m2_e1 | het | 66.6667 | 100.0000 | 50.0000 | 98.7461 | 3 | 0 | 4 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 66.6667 | 100.0000 | 50.0000 | 92.5926 | 2 | 0 | 1 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 91.6667 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l250_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 97.5309 | 1 | 1 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 66.6667 | 100.0000 | 50.0000 | 60.4938 | 22 | 0 | 96 | 96 | 85 | 88.5417 | |