PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 777 778 779 780 781 782 783 784 785 ... 1720 1721 » 39001-39050 / 86044 show all
ciseli-custom	SNP	tv	map_l250_m0_e0	het	59.1512	52.9720	66.9623	96.1499	303	269	302	149	7	4.6980
eyeh-varpipe	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	59.1529	51.0315	70.3486	60.3619	940	902	1433	604	512	84.7682
jpowers-varprowl	INDEL	D16_PLUS	map_l100_m1_e0	*	59.1682	52.8736	67.1642	96.2232	46	41	45	22	19	86.3636
gduggal-snapvard	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	59.1721	54.4401	64.8052	53.7673	8736	7311	8947	4859	4228	87.0138
jlack-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	het	59.1795	86.4865	44.9782	68.8011	128	20	103	126	124	98.4127
gduggal-snapfb	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	59.1835	45.3355	85.2120	34.7503	277	334	824	143	142	99.3007
ckim-isaac	SNP	*	map_l250_m2_e0	homalt	59.1933	42.0700	99.8233	85.8571	1130	1556	1130	2	2	100.0000
ckim-vqsr	SNP	*	map_l250_m2_e0	*	59.1976	42.3843	98.1210	97.1166	3342	4543	3342	64	0	0.0000
gduggal-bwavard	INDEL	D16_PLUS	map_siren	*	59.2100	61.5385	57.0513	92.6450	88	55	89	67	35	52.2388
gduggal-snapplat	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	59.2248	49.9739	72.6787	68.3719	5739	5745	7342	2760	1993	72.2101
anovak-vg	SNP	tv	lowcmp_SimpleRepeat_diTR_51to200	*	59.2384	57.6923	60.8696	95.4092	15	11	14	9	5	55.5556
gduggal-snapplat	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	59.2422	42.8650	95.8708	51.4971	2331	3107	2345	101	90	89.1089
gduggal-snapplat	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	59.2431	51.8849	69.0334	76.6255	16296	15112	21147	9486	4195	44.2231
gduggal-snapplat	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	59.2431	51.8849	69.0334	76.6255	16296	15112	21147	9486	4195	44.2231
gduggal-snapvard	INDEL	D1_5	lowcmp_AllRepeats_gt200bp_gt95identity_merged	*	59.2593	72.7273	50.0000	99.8444	8	3	2	2	2	100.0000
ghariani-varprowl	INDEL	I16_PLUS	map_l125_m1_e0	*	59.2593	53.3333	66.6667	87.5000	8	7	8	4	3	75.0000
ghariani-varprowl	INDEL	I16_PLUS	map_l125_m2_e0	*	59.2593	53.3333	66.6667	88.9908	8	7	8	4	3	75.0000
ghariani-varprowl	INDEL	I16_PLUS	map_l125_m2_e1	*	59.2593	53.3333	66.6667	89.0909	8	7	8	4	3	75.0000
ghariani-varprowl	INDEL	I6_15	map_l125_m0_e0	*	59.2593	53.3333	66.6667	95.5720	8	7	8	4	3	75.0000
jli-custom	INDEL	D16_PLUS	HG002compoundhet	homalt	59.2593	100.0000	42.1053	67.7966	8	0	8	11	11	100.0000
ciseli-custom	INDEL	D16_PLUS	map_l150_m2_e1	*	59.2593	44.4444	88.8889	96.0352	8	10	8	1	1	100.0000
ciseli-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	59.2593	66.6667	53.3333	64.0000	24	12	24	21	20	95.2381
gduggal-bwaplat	INDEL	D16_PLUS	map_l100_m0_e0	het	59.2593	42.1053	100.0000	98.1043	8	11	8	0	0
mlin-fermikit	INDEL	I6_15	map_l125_m1_e0	homalt	59.2593	53.3333	66.6667	87.7551	8	7	8	4	4	100.0000
mlin-fermikit	INDEL	I6_15	map_l125_m2_e0	homalt	59.2593	53.3333	66.6667	89.1892	8	7	8	4	4	100.0000
mlin-fermikit	INDEL	I6_15	map_l125_m2_e1	homalt	59.2593	53.3333	66.6667	89.7436	8	7	8	4	4	100.0000
qzeng-custom	INDEL	I6_15	map_l150_m1_e0	het	59.2593	53.3333	66.6667	95.0549	8	7	18	9	2	22.2222
qzeng-custom	INDEL	I6_15	map_l150_m2_e0	het	59.2593	53.3333	66.6667	95.4925	8	7	18	9	2	22.2222
gduggal-bwavard	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	het	59.2765	78.1250	47.7551	84.1321	125	35	117	128	89	69.5312
gduggal-bwaplat	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	59.2949	45.8221	83.9901	84.3906	340	402	341	65	1	1.5385
anovak-vg	INDEL	I1_5	map_l125_m1_e0	*	59.3006	61.3253	57.4054	86.4983	509	321	531	394	267	67.7665
gduggal-bwaplat	INDEL	D1_5	map_l250_m2_e0	het	59.3023	42.1488	100.0000	98.9699	51	70	51	0	0
ckim-isaac	SNP	*	map_l250_m2_e1	homalt	59.3225	42.2001	99.8259	85.8515	1147	1571	1147	2	2	100.0000
mlin-fermikit	INDEL	I1_5	map_l150_m2_e0	het	59.3258	42.7184	97.0588	85.5779	132	177	132	4	2	50.0000
gduggal-snapplat	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	59.3370	47.9747	77.7515	66.6856	5697	6178	8230	2355	819	34.7771
eyeh-varpipe	INDEL	D16_PLUS	*	*	59.3408	53.1250	67.2039	51.2916	3604	3180	3586	1750	1709	97.6571
gduggal-bwaplat	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	59.3452	47.5410	78.9474	87.6623	29	32	30	8	7	87.5000
ciseli-custom	INDEL	I1_5	map_l150_m0_e0	het	59.3607	61.3208	57.5221	94.3500	65	41	65	48	38	79.1667
gduggal-snapfb	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	59.3672	76.6667	48.4375	84.0000	46	14	31	33	11	33.3333
ciseli-custom	INDEL	D6_15	map_l100_m2_e0	homalt	59.3789	75.3846	48.9796	85.4599	49	16	48	50	47	94.0000
ckim-vqsr	SNP	*	map_l250_m2_e1	*	59.3854	42.5817	98.0963	97.1254	3401	4586	3401	66	0	0.0000
rpoplin-dv42	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_51to200	*	59.4059	43.6893	92.7835	59.2437	90	116	90	7	7	100.0000
ghariani-varprowl	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	59.4059	50.8475	71.4286	81.4978	30	29	30	12	12	100.0000
gduggal-snapvard	INDEL	D6_15	map_l125_m1_e0	homalt	59.4059	44.1176	90.9091	79.0476	15	19	20	2	2	100.0000
gduggal-bwafb	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_gt10	het	59.4214	43.1818	95.2381	93.9481	19	25	20	1	1	100.0000
ciseli-custom	INDEL	*	map_l250_m1_e0	homalt	59.4286	47.7064	78.7879	96.7977	52	57	52	14	8	57.1429
gduggal-snapfb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	59.4318	53.0864	67.5000	54.5455	43	38	54	26	25	96.1538
anovak-vg	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	59.4331	51.2295	70.7650	59.7360	250	238	259	107	80	74.7664
egarrison-hhga	INDEL	D16_PLUS	HG002complexvar	hetalt	59.4347	42.5101	98.7500	56.1644	105	142	158	2	2	100.0000
anovak-vg	INDEL	I1_5	map_l250_m2_e0	*	59.4374	62.8319	56.3910	96.6841	71	42	75	58	33	56.8966

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge