PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37601-37650 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | D6_15 | map_l250_m1_e0 | homalt | 50.0000 | 40.0000 | 66.6667 | 96.1538 | 2 | 3 | 2 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 50.0000 | 50.0000 | 50.0000 | 87.5000 | 1 | 1 | 1 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l150_m0_e0 | * | 50.0000 | 50.0000 | 50.0000 | 84.0000 | 2 | 2 | 2 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l150_m0_e0 | het | 50.0000 | 50.0000 | 50.0000 | 85.7143 | 1 | 1 | 1 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 94.5455 | 3 | 6 | 3 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 95.7143 | 3 | 6 | 3 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | map_l100_m0_e0 | homalt | 50.0000 | 41.6667 | 62.5000 | 87.6923 | 5 | 7 | 5 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l150_m1_e0 | homalt | 50.0000 | 42.8571 | 60.0000 | 93.0556 | 3 | 4 | 3 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l150_m2_e0 | homalt | 50.0000 | 42.8571 | 60.0000 | 93.7500 | 3 | 4 | 3 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l250_m2_e0 | * | 50.0000 | 37.5000 | 75.0000 | 95.5556 | 3 | 5 | 3 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l250_m2_e1 | * | 50.0000 | 37.5000 | 75.0000 | 95.8333 | 3 | 5 | 3 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | * | decoy | homalt | 50.0000 | 100.0000 | 33.3333 | 99.8717 | 3 | 0 | 2 | 4 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 50.0000 | 50.0000 | 50.0000 | 83.3333 | 2 | 2 | 2 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 50.0000 | 50.0000 | 50.0000 | 90.9091 | 1 | 1 | 1 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l150_m0_e0 | het | 50.0000 | 50.0000 | 50.0000 | 95.8763 | 2 | 2 | 2 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l250_m1_e0 | * | 50.0000 | 42.8571 | 60.0000 | 97.5124 | 3 | 4 | 3 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l250_m1_e0 | het | 50.0000 | 50.0000 | 50.0000 | 96.3303 | 2 | 2 | 2 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l250_m1_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 98.5294 | 1 | 2 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | map_l250_m2_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 98.6486 | 1 | 2 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | map_l250_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 98.7179 | 1 | 2 | 1 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 50.0000 | 50.0000 | 50.0000 | 98.6486 | 1 | 1 | 1 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 50.0000 | 50.0000 | 50.0000 | 98.6395 | 1 | 1 | 1 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l250_m0_e0 | * | 50.0000 | 100.0000 | 33.3333 | 94.7368 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l250_m0_e0 | het | 50.0000 | 100.0000 | 33.3333 | 93.0233 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 50.0000 | 50.0000 | 50.0000 | 89.4737 | 2 | 2 | 1 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 50.0000 | 100.0000 | 33.3333 | 99.9972 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 50.0000 | 100.0000 | 33.3333 | 99.9731 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 50.0000 | 50.0000 | 50.0000 | 91.3043 | 1 | 1 | 1 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 50.0000 | 50.0000 | 50.0000 | 89.4737 | 1 | 1 | 1 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 50.0000 | 40.0000 | 66.6667 | 94.3396 | 2 | 3 | 2 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 50.0000 | 40.0000 | 66.6667 | 95.6522 | 2 | 3 | 2 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 50.0000 | 40.0000 | 66.6667 | 95.6522 | 2 | 3 | 2 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.1538 | 1 | 2 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 97.2222 | 1 | 2 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 97.2222 | 1 | 2 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 95.0000 | 1 | 2 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.2963 | 1 | 2 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.2963 | 1 | 2 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 50.0000 | 100.0000 | 33.3333 | 78.5714 | 2 | 0 | 1 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | tv | map_l150_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.0476 | 1 | 2 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 50.0000 | 100.0000 | 33.3333 | 97.9452 | 1 | 0 | 1 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 50.0000 | 100.0000 | 33.3333 | 97.9021 | 1 | 0 | 1 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 50.0000 | 50.0000 | 50.0000 | 86.6667 | 1 | 1 | 1 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m0_e0 | * | 50.0000 | 50.0000 | 50.0000 | 84.0000 | 2 | 2 | 2 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l250_m1_e0 | * | 50.0000 | 42.8571 | 60.0000 | 97.0414 | 3 | 4 | 3 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l250_m1_e0 | het | 50.0000 | 50.0000 | 50.0000 | 97.1831 | 2 | 2 | 2 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l250_m1_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.2963 | 1 | 2 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | map_l250_m2_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.4286 | 1 | 2 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | map_l250_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.5517 | 1 | 2 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | tech_badpromoters | homalt | 50.0000 | 33.3333 | 100.0000 | 66.6667 | 1 | 2 | 1 | 0 | 0 | ||