PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37501-37550 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | I16_PLUS | map_l250_m2_e1 | * | 50.0000 | 100.0000 | 33.3333 | 98.7500 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l250_m1_e0 | het | 50.0000 | 33.3333 | 100.0000 | 98.4848 | 1 | 2 | 1 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l250_m2_e0 | * | 50.0000 | 40.0000 | 66.6667 | 97.8102 | 2 | 3 | 2 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l250_m2_e0 | het | 50.0000 | 33.3333 | 100.0000 | 98.6842 | 1 | 2 | 1 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l250_m2_e1 | * | 50.0000 | 40.0000 | 66.6667 | 97.8723 | 2 | 3 | 2 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l250_m2_e1 | het | 50.0000 | 33.3333 | 100.0000 | 98.7342 | 1 | 2 | 1 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | map_l150_m2_e0 | het | 50.0000 | 47.8261 | 52.3810 | 95.3998 | 22 | 24 | 22 | 20 | 4 | 20.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l250_m0_e0 | * | 50.0000 | 50.0000 | 50.0000 | 98.5258 | 3 | 3 | 3 | 3 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l250_m2_e1 | * | 50.0000 | 45.4545 | 55.5556 | 97.9167 | 10 | 12 | 10 | 8 | 2 | 25.0000 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 50.0000 | 50.0000 | 50.0000 | 74.6032 | 8 | 8 | 8 | 8 | 8 | 100.0000 | |
| ciseli-custom | INDEL | I1_5 | tech_badpromoters | het | 50.0000 | 75.0000 | 37.5000 | 55.5556 | 6 | 2 | 6 | 10 | 7 | 70.0000 | |
| ciseli-custom | SNP | * | map_l250_m1_e0 | hetalt | 50.0000 | 50.0000 | 50.0000 | 90.4762 | 2 | 2 | 2 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l250_m1_e0 | hetalt | 50.0000 | 50.0000 | 50.0000 | 82.6087 | 2 | 2 | 2 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | tv | map_l250_m1_e0 | hetalt | 50.0000 | 50.0000 | 50.0000 | 90.4762 | 2 | 2 | 2 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l250_m0_e0 | * | 50.0000 | 100.0000 | 33.3333 | 98.2456 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l250_m0_e0 | het | 50.0000 | 100.0000 | 33.3333 | 97.7273 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l250_m1_e0 | het | 50.0000 | 66.6667 | 40.0000 | 98.0989 | 2 | 1 | 2 | 3 | 1 | 33.3333 | |
| ckim-dragen | INDEL | D16_PLUS | map_l250_m2_e0 | het | 50.0000 | 66.6667 | 40.0000 | 98.3607 | 2 | 1 | 2 | 3 | 1 | 33.3333 | |
| ckim-dragen | INDEL | D16_PLUS | map_l250_m2_e1 | het | 50.0000 | 66.6667 | 40.0000 | 98.3819 | 2 | 1 | 2 | 3 | 1 | 33.3333 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 50.0000 | 50.0000 | 50.0000 | 99.1111 | 1 | 1 | 1 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 50.0000 | 50.0000 | 50.0000 | 99.1071 | 1 | 1 | 1 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l250_m0_e0 | * | 50.0000 | 100.0000 | 33.3333 | 98.2456 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l250_m0_e0 | het | 50.0000 | 100.0000 | 33.3333 | 97.8102 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.2647 | 1 | 2 | 1 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.3902 | 1 | 2 | 1 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.4048 | 1 | 2 | 1 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 50.0000 | 100.0000 | 33.3333 | 95.0820 | 1 | 0 | 1 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l250_m0_e0 | * | 50.0000 | 100.0000 | 33.3333 | 96.2025 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l250_m0_e0 | het | 50.0000 | 100.0000 | 33.3333 | 95.0000 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C6_15 | * | het | 50.0000 | 42.8571 | 60.0000 | 97.5610 | 3 | 4 | 18 | 12 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D16_PLUS | func_cds | het | 50.0000 | 37.5000 | 75.0000 | 50.0000 | 3 | 5 | 3 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 50.0000 | 100.0000 | 33.3333 | 94.8276 | 1 | 0 | 1 | 2 | 2 | 100.0000 | |
| ckim-gatk | SNP | * | map_l150_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 98.7952 | 1 | 2 | 1 | 0 | 0 | ||
| ckim-gatk | SNP | ti | map_l150_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 98.2143 | 1 | 2 | 1 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l150_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 98.7952 | 1 | 2 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 50.0000 | 33.3333 | 100.0000 | 98.9011 | 1 | 2 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 50.0000 | 33.3333 | 100.0000 | 98.8764 | 1 | 2 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 50.0000 | 33.3333 | 100.0000 | 98.7805 | 1 | 2 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 50.0000 | 33.3333 | 100.0000 | 87.8049 | 3 | 6 | 10 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 93.7500 | 1 | 2 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 94.4444 | 1 | 2 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l250_m0_e0 | * | 50.0000 | 100.0000 | 33.3333 | 97.4576 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l250_m0_e0 | het | 50.0000 | 100.0000 | 33.3333 | 96.7033 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 50.0000 | 100.0000 | 33.3333 | 95.2381 | 1 | 0 | 1 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l250_m1_e0 | * | 50.0000 | 100.0000 | 33.3333 | 98.8593 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l250_m2_e0 | * | 50.0000 | 100.0000 | 33.3333 | 98.9209 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l250_m2_e1 | * | 50.0000 | 100.0000 | 33.3333 | 98.9474 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 93.3333 | 1 | 2 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 93.3333 | 1 | 2 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 50.0000 | 100.0000 | 33.3333 | 99.9972 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |