PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37401-37450 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | I6_15 | map_l250_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 98.3871 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | tech_badpromoters | homalt | 50.0000 | 33.3333 | 100.0000 | 83.3333 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 50.0000 | 33.3333 | 100.0000 | 98.6486 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 50.0000 | 100.0000 | 33.3333 | 99.1549 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | map_l125_m1_e0 | het | 50.0000 | 33.3333 | 100.0000 | 81.2500 | 3 | 6 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 92.3077 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l125_m2_e0 | het | 50.0000 | 33.3333 | 100.0000 | 82.3529 | 3 | 6 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 93.3333 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l125_m2_e1 | het | 50.0000 | 33.3333 | 100.0000 | 83.3333 | 3 | 6 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 93.3333 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l150_m1_e0 | het | 50.0000 | 33.3333 | 100.0000 | 81.8182 | 2 | 4 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 92.3077 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l150_m2_e0 | het | 50.0000 | 33.3333 | 100.0000 | 81.8182 | 2 | 4 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 93.3333 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l150_m2_e1 | het | 50.0000 | 33.3333 | 100.0000 | 81.8182 | 2 | 4 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 93.3333 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | map_l150_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 98.9011 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 50.0000 | 33.3333 | 100.0000 | 99.3939 | 2 | 4 | 2 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l150_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 98.1818 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 50.0000 | 33.3333 | 100.0000 | 98.6486 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 50.0000 | 33.3333 | 100.0000 | 97.9167 | 2 | 4 | 2 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l150_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 98.9011 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | map_l100_m0_e0 | * | 50.0000 | 64.2857 | 40.9091 | 94.2181 | 18 | 10 | 18 | 26 | 5 | 19.2308 | |
| eyeh-varpipe | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 83.3333 | 2 | 4 | 11 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 50.0000 | 50.0000 | 50.0000 | 81.8182 | 1 | 1 | 1 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m1_e0 | het | 50.0000 | 33.3333 | 100.0000 | 68.1818 | 3 | 6 | 7 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m2_e0 | het | 50.0000 | 33.3333 | 100.0000 | 73.0769 | 3 | 6 | 7 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m2_e1 | het | 50.0000 | 33.3333 | 100.0000 | 73.0769 | 3 | 6 | 7 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m1_e0 | het | 50.0000 | 33.3333 | 100.0000 | 76.4706 | 2 | 4 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m2_e0 | het | 50.0000 | 33.3333 | 100.0000 | 77.7778 | 2 | 4 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m2_e1 | het | 50.0000 | 33.3333 | 100.0000 | 77.7778 | 2 | 4 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | tech_badpromoters | het | 50.0000 | 50.0000 | 50.0000 | 33.3333 | 1 | 1 | 1 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 50.0000 | 100.0000 | 33.3333 | 94.5455 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 50.0000 | 100.0000 | 33.3333 | 92.8571 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 50.0000 | 33.3333 | 100.0000 | 98.7654 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | func_cds | hetalt | 50.0000 | 50.0000 | 50.0000 | 33.3333 | 2 | 2 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 50.0000 | 100.0000 | 33.3333 | 96.5517 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 50.0000 | 100.0000 | 33.3333 | 95.5882 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 50.0000 | 40.0000 | 66.6667 | 99.7432 | 2 | 3 | 2 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | map_l150_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.1453 | 3 | 6 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l250_m1_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.4937 | 2 | 4 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l250_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.5680 | 2 | 4 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l250_m2_e1 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.5763 | 2 | 4 | 2 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 50.0000 | 36.3636 | 80.0000 | 99.8480 | 4 | 7 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 50.0000 | 50.0000 | 50.0000 | 99.3377 | 1 | 1 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.7183 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.7455 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.7500 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 50.0000 | 33.3333 | 100.0000 | 98.5294 | 2 | 4 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l100_m0_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 94.4954 | 8 | 16 | 6 | 0 | 0 | ||