PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36301-36350 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 40.0000 | 50.0000 | 33.3333 | 85.0000 | 1 | 1 | 1 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l150_m0_e0 | homalt | 40.0000 | 25.0000 | 100.0000 | 94.7368 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | map_l250_m0_e0 | * | 40.0000 | 100.0000 | 25.0000 | 96.8504 | 1 | 0 | 1 | 3 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 40.0000 | 25.0000 | 100.0000 | 99.9117 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | decoy | het | 40.0000 | 25.0000 | 100.0000 | 99.4709 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 40.0000 | 26.4045 | 82.4561 | 61.2245 | 47 | 131 | 47 | 10 | 10 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | map_l150_m0_e0 | * | 40.0000 | 25.0000 | 100.0000 | 94.1176 | 1 | 3 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | map_l125_m0_e0 | hetalt | 40.0000 | 27.2727 | 75.0000 | 94.2857 | 3 | 8 | 3 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l150_m0_e0 | * | 40.0000 | 57.1429 | 30.7692 | 93.1937 | 4 | 3 | 4 | 9 | 2 | 22.2222 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m2_e0 | homalt | 40.0000 | 33.3333 | 50.0000 | 95.7447 | 2 | 4 | 2 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m2_e1 | homalt | 40.0000 | 33.3333 | 50.0000 | 95.8333 | 2 | 4 | 2 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 40.0000 | 25.0000 | 100.0000 | 75.0000 | 1 | 3 | 1 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 40.0000 | 100.0000 | 25.0000 | 92.0000 | 1 | 0 | 1 | 3 | 2 | 66.6667 | |
| qzeng-custom | SNP | ti | map_l250_m1_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 98.5294 | 1 | 3 | 1 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l250_m1_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 99.0991 | 1 | 3 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 40.0000 | 50.0000 | 33.3333 | 89.4737 | 1 | 1 | 2 | 4 | 0 | 0.0000 | |
| qzeng-custom | SNP | * | map_l250_m1_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 99.0991 | 1 | 3 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 40.0000 | 25.0000 | 100.0000 | 83.3333 | 1 | 3 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 40.0000 | 50.0000 | 33.3333 | 89.6552 | 1 | 1 | 1 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m0_e0 | * | 40.0000 | 33.3333 | 50.0000 | 89.7436 | 2 | 4 | 2 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m0_e0 | het | 40.0000 | 33.3333 | 50.0000 | 91.3043 | 1 | 2 | 1 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 40.0000 | 25.0000 | 100.0000 | 60.0000 | 3 | 9 | 4 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | map_l250_m1_e0 | * | 40.0000 | 28.5714 | 66.6667 | 96.1039 | 2 | 5 | 2 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l250_m1_e0 | het | 40.0000 | 25.0000 | 100.0000 | 97.2973 | 1 | 3 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | map_l250_m1_e0 | homalt | 40.0000 | 33.3333 | 50.0000 | 94.2857 | 1 | 2 | 1 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l250_m2_e0 | homalt | 40.0000 | 33.3333 | 50.0000 | 94.8718 | 1 | 2 | 1 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l250_m2_e1 | homalt | 40.0000 | 33.3333 | 50.0000 | 95.2381 | 1 | 2 | 1 | 1 | 1 | 100.0000 | |
| mlin-fermikit | SNP | ti | map_l125_m1_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 68.4211 | 6 | 18 | 6 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | map_l125_m2_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 77.7778 | 6 | 18 | 6 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | map_l125_m2_e1 | hetalt | 40.0000 | 25.0000 | 100.0000 | 78.5714 | 6 | 18 | 6 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | tech_badpromoters | het | 40.0000 | 50.0000 | 33.3333 | 66.6667 | 1 | 1 | 1 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 40.0000 | 33.3333 | 50.0000 | 99.4652 | 1 | 2 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D6_15 | func_cds | homalt | 40.0000 | 25.0000 | 100.0000 | 50.0000 | 3 | 9 | 2 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I6_15 | func_cds | hetalt | 40.0000 | 25.0000 | 100.0000 | 0.0000 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 40.0000 | 33.3333 | 50.0000 | 98.1982 | 1 | 2 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 40.0000 | 33.3333 | 50.0000 | 98.1982 | 1 | 2 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l125_m0_e0 | het | 40.0000 | 33.3333 | 50.0000 | 90.4762 | 3 | 6 | 3 | 3 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l250_m1_e0 | het | 40.0000 | 33.3333 | 50.0000 | 93.9394 | 1 | 2 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l250_m2_e0 | het | 40.0000 | 33.3333 | 50.0000 | 95.0000 | 1 | 2 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l250_m2_e1 | het | 40.0000 | 33.3333 | 50.0000 | 95.1220 | 1 | 2 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 40.0000 | 40.0000 | 40.0000 | 55.8824 | 30 | 45 | 42 | 63 | 42 | 66.6667 | |
| gduggal-snapvard | INDEL | I6_15 | map_l150_m0_e0 | homalt | 40.0000 | 25.0000 | 100.0000 | 96.2963 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 40.0000 | 100.0000 | 25.0000 | 68.2540 | 5 | 0 | 5 | 15 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 40.0000 | 100.0000 | 25.0000 | 50.0000 | 1 | 0 | 1 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 40.0000 | 100.0000 | 25.0000 | 68.2540 | 5 | 0 | 5 | 15 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 40.0000 | 25.0000 | 100.0000 | 99.8907 | 1 | 3 | 1 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 40.0000 | 100.0000 | 25.0000 | 92.7273 | 1 | 0 | 1 | 3 | 2 | 66.6667 | |
| anovak-vg | INDEL | I6_15 | HG002complexvar | het | 40.0214 | 28.2378 | 68.6825 | 52.4803 | 665 | 1690 | 954 | 435 | 281 | 64.5977 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 40.0511 | 70.7317 | 27.9343 | 65.1961 | 116 | 48 | 119 | 307 | 306 | 99.6743 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 40.0585 | 36.9961 | 43.6736 | 81.3091 | 3111 | 5298 | 3179 | 4100 | 363 | 8.8537 | |