PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
35001-35050 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 21.8978 | 16.8539 | 31.2500 | 56.7568 | 15 | 74 | 15 | 33 | 19 | 57.5758 | |
| eyeh-varpipe | INDEL | I16_PLUS | HG002complexvar | hetalt | 21.9016 | 12.5373 | 86.5385 | 70.1149 | 42 | 293 | 45 | 7 | 7 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | HG002compoundhet | homalt | 21.9081 | 100.0000 | 12.3016 | 63.4253 | 31 | 0 | 31 | 221 | 219 | 99.0950 | |
| ciseli-custom | INDEL | I16_PLUS | segdup | * | 21.9321 | 12.7660 | 77.7778 | 96.3415 | 6 | 41 | 7 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 21.9561 | 12.5000 | 90.1639 | 55.1471 | 109 | 763 | 110 | 12 | 10 | 83.3333 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 22.0217 | 71.6216 | 13.0112 | 43.9194 | 106 | 42 | 105 | 702 | 699 | 99.5726 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 22.0793 | 12.5407 | 92.2309 | 57.4591 | 1194 | 8327 | 1294 | 109 | 93 | 85.3211 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 22.1517 | 13.2826 | 66.6667 | 82.1918 | 157 | 1025 | 156 | 78 | 60 | 76.9231 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 22.1585 | 18.8343 | 26.9076 | 54.2967 | 740 | 3189 | 737 | 2002 | 1995 | 99.6503 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 22.2222 | 12.5000 | 100.0000 | 57.1429 | 3 | 21 | 3 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l125_m0_e0 | hetalt | 22.2222 | 12.5000 | 100.0000 | 98.3871 | 1 | 7 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | map_siren | hetalt | 22.2222 | 12.5000 | 100.0000 | 75.0000 | 2 | 14 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | C1_5 | * | hetalt | 22.2222 | 100.0000 | 12.5000 | 85.4545 | 1 | 0 | 1 | 7 | 2 | 28.5714 | |
| gduggal-bwaplat | INDEL | I16_PLUS | map_l100_m0_e0 | het | 22.2222 | 12.5000 | 100.0000 | 98.1132 | 1 | 7 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | map_l100_m0_e0 | het | 22.2222 | 12.5000 | 100.0000 | 80.0000 | 1 | 7 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | map_l125_m0_e0 | * | 22.2222 | 16.6667 | 33.3333 | 76.9231 | 1 | 5 | 1 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | SNP | ti | map_l125_m0_e0 | hetalt | 22.2222 | 12.5000 | 100.0000 | 97.2222 | 1 | 7 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 22.2222 | 12.5000 | 100.0000 | 95.1220 | 2 | 14 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 22.2222 | 12.5000 | 100.0000 | 95.2381 | 2 | 14 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | map_l150_m1_e0 | * | 22.2222 | 13.3333 | 66.6667 | 97.7099 | 2 | 13 | 2 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I6_15 | map_l150_m2_e1 | homalt | 22.2222 | 12.5000 | 100.0000 | 97.8723 | 1 | 7 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | decoy | * | 22.2222 | 16.6667 | 33.3333 | 98.5915 | 1 | 5 | 1 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_siren | hetalt | 22.2222 | 12.9032 | 80.0000 | 93.5897 | 4 | 27 | 4 | 1 | 1 | 100.0000 | |
| ckim-vqsr | SNP | * | map_l100_m0_e0 | hetalt | 22.2222 | 12.5000 | 100.0000 | 98.1308 | 2 | 14 | 2 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | map_l100_m0_e0 | hetalt | 22.2222 | 12.5000 | 100.0000 | 98.1308 | 2 | 14 | 2 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I6_15 | map_l150_m2_e1 | homalt | 22.2222 | 12.5000 | 100.0000 | 98.5915 | 1 | 7 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | map_l125_m2_e1 | * | 22.2222 | 14.2857 | 50.0000 | 94.2857 | 4 | 24 | 4 | 4 | 1 | 25.0000 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 22.2222 | 50.0000 | 14.2857 | 93.8596 | 1 | 1 | 1 | 6 | 1 | 16.6667 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 22.2306 | 13.2826 | 68.1223 | 82.0392 | 157 | 1025 | 156 | 73 | 59 | 80.8219 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 22.2368 | 13.7681 | 57.7726 | 41.9919 | 57 | 357 | 249 | 182 | 181 | 99.4505 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 22.3230 | 16.2712 | 35.5425 | 80.2066 | 432 | 2223 | 606 | 1099 | 407 | 37.0337 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 22.4034 | 18.2049 | 29.1188 | 44.6643 | 215 | 966 | 228 | 555 | 520 | 93.6937 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 22.4138 | 15.8537 | 38.2353 | 86.4000 | 13 | 69 | 13 | 21 | 13 | 61.9048 | |
| gduggal-snapplat | INDEL | * | map_l100_m2_e0 | hetalt | 22.4330 | 13.6000 | 64.0000 | 98.2970 | 17 | 108 | 16 | 9 | 5 | 55.5556 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 22.4719 | 41.6667 | 15.3846 | 67.8218 | 10 | 14 | 10 | 55 | 52 | 94.5455 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 22.4849 | 18.3099 | 29.1262 | 29.9320 | 26 | 116 | 30 | 73 | 61 | 83.5616 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 22.5181 | 16.0393 | 37.7778 | 69.3878 | 98 | 513 | 85 | 140 | 43 | 30.7143 | |
| anovak-vg | INDEL | D16_PLUS | HG002compoundhet | homalt | 22.5256 | 75.0000 | 13.2530 | 46.6809 | 6 | 2 | 33 | 216 | 158 | 73.1481 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 22.5601 | 18.5079 | 28.8840 | 55.7171 | 129 | 568 | 132 | 325 | 240 | 73.8462 | |
| asubramanian-gatk | SNP | tv | map_l250_m1_e0 | homalt | 22.5907 | 12.7336 | 100.0000 | 97.9792 | 109 | 747 | 109 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 22.6415 | 15.3846 | 42.8571 | 75.0000 | 2 | 11 | 3 | 4 | 3 | 75.0000 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m1_e0 | homalt | 22.6415 | 13.6364 | 66.6667 | 97.8774 | 6 | 38 | 6 | 3 | 1 | 33.3333 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 22.6415 | 13.6364 | 66.6667 | 53.8462 | 9 | 57 | 12 | 6 | 6 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | HG002compoundhet | het | 22.6701 | 91.4720 | 12.9384 | 39.2155 | 783 | 73 | 808 | 5437 | 5400 | 99.3195 | |
| gduggal-bwavard | INDEL | D6_15 | HG002compoundhet | het | 22.7477 | 94.6262 | 12.9278 | 37.5915 | 810 | 46 | 816 | 5496 | 5446 | 99.0902 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 22.7618 | 14.1194 | 58.6792 | 46.6264 | 97 | 590 | 311 | 219 | 217 | 99.0868 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 22.7672 | 17.5860 | 32.2767 | 75.3288 | 271 | 1270 | 224 | 470 | 9 | 1.9149 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 22.7901 | 26.5957 | 19.9372 | 79.3316 | 125 | 345 | 127 | 510 | 0 | 0.0000 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 22.7920 | 22.7273 | 22.8571 | 61.5385 | 5 | 17 | 8 | 27 | 15 | 55.5556 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 22.8070 | 15.8537 | 40.6250 | 85.9649 | 13 | 69 | 13 | 19 | 12 | 63.1579 | |