PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33301-33350 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 66.6667 | 86.3636 | 0 | 0 | 2 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 66.6667 | 86.3636 | 0 | 0 | 2 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 100.0000 | 93.3333 | 0 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 100.0000 | 93.3333 | 0 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| ckim-dragen | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 0.0000 | 50.0000 | 50.0000 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 50.0000 | 50.0000 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 75.9036 | 0.0000 | 0.0000 | 63 | 20 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 95.4545 | 0.0000 | 0.0000 | 42 | 2 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 95.7878 | 0.0000 | 0.0000 | 614 | 27 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 93.3775 | 0.0000 | 0.0000 | 141 | 10 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 99.5781 | 0.0000 | 0.0000 | 236 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 91.6667 | 0.0000 | 0.0000 | 11 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 90.9091 | 0.0000 | 0.0000 | 20 | 2 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 90.9091 | 0.0000 | 0.0000 | 20 | 2 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 90.9091 | 0.0000 | 0.0000 | 20 | 2 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 87.5000 | 0.0000 | 0.0000 | 7 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 0.0000 | 87.5000 | 0.0000 | 0.0000 | 7 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 87.5000 | 0.0000 | 0.0000 | 7 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_siren | hetalt | 0.0000 | 91.6667 | 0.0000 | 0.0000 | 66 | 6 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | segdup | hetalt | 0.0000 | 97.7778 | 0.0000 | 0.0000 | 44 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | tech_badpromoters | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | * | hetalt | 0.0000 | 99.6556 | 0.0000 | 0.0000 | 868 | 3 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | HG002complexvar | hetalt | 0.0000 | 99.0323 | 0.0000 | 0.0000 | 307 | 3 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | HG002compoundhet | hetalt | 0.0000 | 99.6520 | 0.0000 | 0.0000 | 859 | 3 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | func_cds | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 10 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 92.3077 | 0.0000 | 0.0000 | 12 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 15 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 15 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 5 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 5 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | map_l100_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 16 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | map_l100_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 41 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | map_l100_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 42 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | map_l100_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 43 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 9 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | map_l125_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 30 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | map_l125_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 30 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | map_l125_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 30 | 0 | 0 | 0 | 0 | ||