PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32851-32900 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 96.3855 | 0 | 0 | 6 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 56.2500 | 94.0520 | 0 | 0 | 9 | 7 | 2 | 28.5714 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 60.0000 | 93.5345 | 0 | 0 | 9 | 6 | 1 | 16.6667 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 74.7664 | 96.5316 | 0 | 0 | 80 | 27 | 2 | 7.4074 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 73.1959 | 96.1416 | 0 | 0 | 71 | 26 | 1 | 3.8462 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 90.0000 | 98.2487 | 0 | 0 | 9 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 78.2609 | 96.7537 | 0 | 0 | 72 | 20 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 75.9036 | 96.3850 | 0 | 0 | 63 | 20 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 98.3271 | 0 | 0 | 9 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 80.4196 | 96.5011 | 0 | 0 | 115 | 28 | 2 | 7.1429 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 77.8689 | 96.2531 | 0 | 0 | 95 | 27 | 1 | 3.7037 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 95.2381 | 97.4729 | 0 | 0 | 20 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 84.9624 | 96.2875 | 0 | 1 | 226 | 40 | 3 | 7.5000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 82.0276 | 96.1532 | 0 | 1 | 178 | 39 | 2 | 5.1282 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 97.9592 | 96.7848 | 0 | 0 | 48 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 84.7368 | 95.3466 | 0 | 0 | 161 | 29 | 2 | 6.8966 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 80.6667 | 95.5264 | 0 | 0 | 121 | 29 | 2 | 6.8966 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 100.0000 | 94.5205 | 0 | 0 | 40 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 0.0000 | 0.0000 | 100.0000 | 92.5275 | 0 | 0 | 68 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 100.0000 | 99.9057 | 0 | 0 | 6 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 100.0000 | 99.8948 | 0 | 0 | 5 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9380 | 0 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 94.1176 | 93.9286 | 0 | 1 | 64 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 92.4528 | 93.7204 | 0 | 1 | 49 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 100.0000 | 94.5652 | 0 | 0 | 15 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 45.4545 | 90.4348 | 0 | 0 | 5 | 6 | 1 | 16.6667 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 45.4545 | 89.5238 | 0 | 0 | 5 | 6 | 1 | 16.6667 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 0.0000 | 0.0000 | 100.0000 | 91.5789 | 0 | 0 | 8 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 0.0000 | 50.0000 | 83.3333 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 0.0000 | 50.0000 | 81.8182 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 57.1429 | 94.9091 | 0 | 0 | 16 | 12 | 5 | 41.6667 | |
| cchapple-custom | INDEL | C1_5 | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 45.4545 | 94.8598 | 0 | 0 | 10 | 12 | 5 | 41.6667 | |
| cchapple-custom | INDEL | C1_5 | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.0820 | 0 | 0 | 6 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 67.9245 | 95.0188 | 0 | 0 | 36 | 17 | 8 | 47.0588 | |
| cchapple-custom | INDEL | C1_5 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 60.4651 | 94.8687 | 0 | 0 | 26 | 17 | 8 | 47.0588 | |
| cchapple-custom | INDEL | C1_5 | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.5752 | 0 | 0 | 10 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 65.4545 | 95.2132 | 0 | 0 | 36 | 19 | 9 | 47.3684 | |
| cchapple-custom | INDEL | C1_5 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 57.7778 | 95.0166 | 0 | 0 | 26 | 19 | 9 | 47.3684 | |
| cchapple-custom | INDEL | C1_5 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.9350 | 0 | 0 | 10 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 66.0714 | 95.2421 | 0 | 0 | 37 | 19 | 9 | 47.3684 | |
| cchapple-custom | INDEL | C1_5 | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 58.6957 | 95.0324 | 0 | 0 | 27 | 19 | 9 | 47.3684 | |
| cchapple-custom | INDEL | C1_5 | map_l100_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.0159 | 0 | 0 | 10 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 50.0000 | 96.5347 | 0 | 0 | 7 | 7 | 4 | 57.1429 | |
| cchapple-custom | INDEL | C1_5 | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 41.6667 | 96.1783 | 0 | 0 | 5 | 7 | 4 | 57.1429 | |
| cchapple-custom | INDEL | C1_5 | map_l125_m0_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.7778 | 0 | 0 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 65.8537 | 94.7301 | 0 | 0 | 27 | 14 | 7 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 56.2500 | 94.7798 | 0 | 0 | 18 | 14 | 7 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l125_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 94.5455 | 0 | 0 | 9 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 66.6667 | 95.1445 | 0 | 0 | 28 | 14 | 7 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 56.2500 | 95.3148 | 0 | 0 | 18 | 14 | 7 | 50.0000 | |