PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32601-32650 / 86044 show all | |||||||||||||||
| eyeh-varpipe | SNP | * | segdupwithalt | * | 0.0000 | 0.0000 | 50.0000 | 99.9991 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | segdupwithalt | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9987 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | decoy | * | 0.0000 | 0.0000 | 100.0000 | 99.9935 | 0 | 0 | 5 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | decoy | het | 0.0000 | 0.0000 | 100.0000 | 99.9962 | 0 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | decoy | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9871 | 0 | 0 | 3 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 81.2500 | 93.8697 | 0 | 0 | 13 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 91.2088 | 0 | 0 | 8 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 57.1429 | 92.0455 | 0 | 0 | 4 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 100.0000 | 95.2381 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 33.3333 | 99.9533 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 0.0000 | 33.3333 | 99.8458 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 40.0000 | 95.0495 | 0 | 0 | 2 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | SNP | ti | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 94.3182 | 0 | 0 | 5 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | segdupwithalt | * | 0.0000 | 0.0000 | 50.0000 | 99.9987 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | ti | segdupwithalt | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9980 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | decoy | * | 0.0000 | 0.0000 | 100.0000 | 99.9914 | 0 | 0 | 4 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | decoy | het | 0.0000 | 0.0000 | 100.0000 | 99.9939 | 0 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | decoy | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9851 | 0 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 91.7431 | 0 | 0 | 9 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 86.2745 | 0 | 0 | 7 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 97.6744 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 100.0000 | 94.1176 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 66.6667 | 95.7746 | 0 | 0 | 2 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | segdupwithalt | * | 0.0000 | 0.0000 | 100.0000 | 99.9988 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | segdupwithalt | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9963 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-bwavard | SNP | tv | map_siren | hetalt | 0.0000 | 1.2346 | 0.0000 | 0.0000 | 1 | 80 | 0 | 0 | 0 | ||
| gduggal-snapfb | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 10.5263 | 90.1554 | 0 | 0 | 2 | 17 | 1 | 5.8824 | |
| gduggal-snapfb | INDEL | C1_5 | HG002complexvar | homalt | 0.0000 | 0.0000 | 22.2222 | 80.0000 | 0 | 0 | 2 | 7 | 1 | 14.2857 | |
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 4.0000 | 79.6748 | 0 | 1 | 1 | 24 | 4 | 16.6667 | |
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 4.7619 | 75.0000 | 0 | 1 | 1 | 20 | 3 | 15.0000 | |
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 11.1111 | 75.0000 | 0 | 0 | 1 | 8 | 2 | 25.0000 | |
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 14.2857 | 70.8333 | 0 | 0 | 1 | 6 | 2 | 33.3333 | |
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 16.6667 | 79.3103 | 0 | 0 | 1 | 5 | 2 | 40.0000 | |
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 25.0000 | 77.7778 | 0 | 0 | 1 | 3 | 2 | 66.6667 | |
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 5.2632 | 75.0000 | 0 | 0 | 1 | 18 | 2 | 11.1111 | |
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 5.8824 | 68.5185 | 0 | 0 | 1 | 16 | 2 | 12.5000 | |
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 4.0000 | 79.6748 | 0 | 1 | 1 | 24 | 4 | 16.6667 | |
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 4.7619 | 75.0000 | 0 | 1 | 1 | 20 | 3 | 15.0000 | |
| gduggal-snapfb | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 33.3333 | 68.4211 | 0 | 1 | 2 | 4 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 40.0000 | 54.5455 | 0 | 1 | 2 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | C1_5 | map_siren | * | 0.0000 | 0.0000 | 33.3333 | 94.8276 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | C1_5 | map_siren | het | 0.0000 | 0.0000 | 33.3333 | 89.2857 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | C6_15 | * | hetalt | 0.0000 | 0.0000 | 50.0000 | 98.0000 | 0 | 0 | 2 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 50.0000 | 98.0583 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | C6_15 | HG002complexvar | hetalt | 0.0000 | 0.0000 | 50.0000 | 96.1538 | 0 | 0 | 2 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | C6_15 | HG002complexvar | homalt | 0.0000 | 0.0000 | 100.0000 | 96.6667 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | C6_15 | HG002compoundhet | * | 0.0000 | 0.0000 | 20.0000 | 93.3333 | 0 | 0 | 1 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | C6_15 | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 50.0000 | 96.1538 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 50.0000 | 97.0149 | 0 | 0 | 2 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 96.1538 | 0 | 0 | 1 | 0 | 0 | ||