PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
31501-31550 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 50.0000 | 95.3488 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 100.0000 | 95.3488 | 0 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 100.0000 | 94.4444 | 0 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 0.0000 | 100.0000 | 86.9565 | 0 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 0.0000 | 100.0000 | 90.0000 | 0 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 100.0000 | 88.8889 | 0 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 0.0000 | 0.0000 | 100.0000 | 75.0000 | 0 | 0 | 1 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 50.0000 | 0.0000 | 94.4444 | 1 | 1 | 0 | 1 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | * | * | hetalt | 0.0000 | 0.7648 | 0.0000 | 0.0000 | 193 | 25044 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | HG002complexvar | hetalt | 0.0000 | 2.7305 | 0.0000 | 0.0000 | 101 | 3598 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | HG002compoundhet | hetalt | 0.0000 | 0.7625 | 0.0000 | 0.0000 | 192 | 24988 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.6015 | 0.0000 | 0.0000 | 23 | 3801 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.9081 | 0.0000 | 0.0000 | 140 | 15277 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.7543 | 0.0000 | 0.0000 | 126 | 16579 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 1.7964 | 0.0000 | 0.0000 | 3 | 164 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 2.5751 | 0.0000 | 0.0000 | 6 | 227 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 3.7879 | 0.0000 | 0.0000 | 5 | 127 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.5876 | 0.0000 | 0.0000 | 16 | 2707 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.6030 | 0.0000 | 0.0000 | 83 | 13681 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.6033 | 0.0000 | 0.0000 | 67 | 11038 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.6271 | 0.0000 | 0.0000 | 88 | 13944 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.7543 | 0.0000 | 0.0000 | 126 | 16579 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.8401 | 0.0000 | 0.0000 | 88 | 10387 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0799 | 0.0000 | 0.0000 | 1 | 1251 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.7477 | 0.0000 | 0.0000 | 4 | 531 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 1.3050 | 0.0000 | 0.0000 | 35 | 2647 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.5858 | 0.0000 | 0.0000 | 7 | 1188 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 1.0834 | 0.0000 | 0.0000 | 10 | 913 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | map_l100_m1_e0 | hetalt | 0.0000 | 0.8065 | 0.0000 | 0.0000 | 1 | 123 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | map_l100_m2_e0 | hetalt | 0.0000 | 0.8000 | 0.0000 | 0.0000 | 1 | 124 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | map_l100_m2_e1 | hetalt | 0.0000 | 1.5152 | 0.0000 | 0.0000 | 2 | 130 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | map_siren | hetalt | 0.0000 | 0.8097 | 0.0000 | 0.0000 | 2 | 245 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | segdup | hetalt | 0.0000 | 0.7692 | 0.0000 | 0.0000 | 1 | 129 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | C1_5 | * | * | 0.0000 | 90.0000 | 0.0000 | 0.0000 | 9 | 1 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | C1_5 | * | het | 0.0000 | 88.8889 | 0.0000 | 0.0000 | 8 | 1 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | C1_5 | * | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | C1_5 | HG002complexvar | * | 0.0000 | 85.7143 | 0.0000 | 0.0000 | 6 | 1 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | C1_5 | HG002complexvar | het | 0.0000 | 85.7143 | 0.0000 | 0.0000 | 6 | 1 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | C1_5 | HG002compoundhet | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | C1_5 | HG002compoundhet | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 2 | 1 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 2 | 1 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | C6_15 | * | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | C6_15 | * | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | C6_15 | HG002complexvar | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | C6_15 | HG002complexvar | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||