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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30451-30500 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 16.4557 | 81.6279 | 0 | 0 | 13 | 66 | 6 | 9.0909 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 96.5517 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 19.2308 | 81.4947 | 0 | 0 | 10 | 42 | 4 | 9.5238 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 17.6471 | 79.8419 | 0 | 0 | 9 | 42 | 4 | 9.5238 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 96.4286 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 25.0000 | 84.7619 | 0 | 0 | 12 | 36 | 7 | 19.4444 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 23.9130 | 83.8596 | 0 | 0 | 11 | 35 | 7 | 20.0000 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 50.0000 | 93.3333 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 43.6441 | 89.1892 | 0 | 0 | 103 | 133 | 36 | 27.0677 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 41.1765 | 88.7014 | 0 | 0 | 91 | 130 | 35 | 26.9231 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 80.0000 | 93.3921 | 0 | 0 | 12 | 3 | 1 | 33.3333 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 48.1481 | 89.9415 | 0 | 0 | 91 | 98 | 29 | 29.5918 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 45.4545 | 89.5238 | 0 | 0 | 80 | 96 | 28 | 29.1667 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 84.6154 | 93.4673 | 0 | 0 | 11 | 2 | 1 | 50.0000 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 36.3924 | 88.4798 | 0 | 0 | 115 | 201 | 40 | 19.9005 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 34.0000 | 87.9130 | 0 | 0 | 102 | 198 | 39 | 19.6970 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 81.2500 | 93.8697 | 0 | 0 | 13 | 3 | 1 | 33.3333 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 32.2896 | 88.3995 | 0 | 0 | 165 | 346 | 61 | 17.6301 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 30.5499 | 87.9361 | 0 | 0 | 150 | 341 | 58 | 17.0088 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 75.0000 | 94.0299 | 0 | 0 | 15 | 5 | 3 | 60.0000 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 47.2362 | 89.5263 | 0 | 0 | 94 | 105 | 43 | 40.9524 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 46.0317 | 89.0815 | 0 | 0 | 87 | 102 | 40 | 39.2157 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 70.0000 | 94.0828 | 0 | 0 | 7 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 11.1111 | 93.3333 | 0 | 0 | 1 | 8 | 4 | 50.0000 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 0.0000 | 12.5000 | 93.2203 | 0 | 0 | 1 | 7 | 4 | 57.1429 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.5435 | 0.0000 | 0.0000 | 44 | 8051 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.6006 | 0.0000 | 0.0000 | 41 | 6786 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.5384 | 0.0000 | 0.0000 | 44 | 8129 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.5382 | 0.0000 | 0.0000 | 50 | 9241 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.6680 | 0.0000 | 0.0000 | 46 | 6840 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.9732 | 0.0000 | 0.0000 | 4 | 407 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.5358 | 0.0000 | 0.0000 | 8 | 1485 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.1538 | 0.0000 | 0.0000 | 1 | 649 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.4329 | 0.0000 | 0.0000 | 2 | 460 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 0.0000 | 1.9608 | 0.0000 | 0.0000 | 1 | 50 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | segdup | hetalt | 0.0000 | 1.9231 | 0.0000 | 0.0000 | 1 | 51 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | * | hetalt | 0.0000 | 0.3915 | 0.0000 | 0.0000 | 32 | 8142 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | HG002complexvar | hetalt | 0.0000 | 1.6782 | 0.0000 | 0.0000 | 17 | 996 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | HG002compoundhet | hetalt | 0.0000 | 0.3926 | 0.0000 | 0.0000 | 32 | 8119 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.2959 | 0.0000 | 0.0000 | 7 | 2359 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.4257 | 0.0000 | 0.0000 | 29 | 6783 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.3971 | 0.0000 | 0.0000 | 32 | 8027 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 1.8182 | 0.0000 | 0.0000 | 1 | 54 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 3.0303 | 0.0000 | 0.0000 | 1 | 32 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.2342 | 0.0000 | 0.0000 | 4 | 1704 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.3656 | 0.0000 | 0.0000 | 26 | 7086 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.4046 | 0.0000 | 0.0000 | 22 | 5416 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.3624 | 0.0000 | 0.0000 | 26 | 7148 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.3971 | 0.0000 | 0.0000 | 32 | 8027 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.3982 | 0.0000 | 0.0000 | 19 | 4753 | 0 | 0 | 0 | ||