PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30201-30250 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 2 | 1 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 2 | 1 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 2 | 1 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 37.5000 | 95.8549 | 0 | 1 | 3 | 5 | 3 | 60.0000 | |
| gduggal-snapvard | INDEL | I6_15 | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 37.5000 | 95.5056 | 0 | 0 | 3 | 5 | 3 | 60.0000 | |
| gduggal-snapvard | INDEL | I6_15 | map_siren | hetalt | 0.0000 | 29.1667 | 0.0000 | 0.0000 | 21 | 51 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | segdup | hetalt | 0.0000 | 28.8889 | 0.0000 | 0.0000 | 13 | 32 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | * | * | hetalt | 0.0000 | 0.6889 | 0.0000 | 0.0000 | 6 | 865 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | * | HG002complexvar | hetalt | 0.0000 | 1.9355 | 0.0000 | 0.0000 | 6 | 304 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | * | HG002compoundhet | hetalt | 0.0000 | 0.6961 | 0.0000 | 0.0000 | 6 | 856 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | * | decoy | * | 0.0000 | 0.0000 | 100.0000 | 99.9991 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-snapvard | SNP | * | decoy | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9931 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-snapvard | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 7.6923 | 0.0000 | 0.0000 | 1 | 12 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 6.6667 | 0.0000 | 0.0000 | 1 | 14 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 1 | 1 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 1 | 1 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 1 | 2 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 6.6667 | 0.0000 | 0.0000 | 1 | 14 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| gduggal-snapplat | INDEL | C1_5 | * | het | 0.0000 | 33.3333 | 0.0000 | 92.0354 | 3 | 6 | 0 | 9 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 50.0000 | 93.5484 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | C1_5 | HG002complexvar | het | 0.0000 | 14.2857 | 0.0000 | 84.2105 | 1 | 6 | 0 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | C1_5 | HG002complexvar | homalt | 0.0000 | 0.0000 | 50.0000 | 66.6667 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 33.3333 | 95.5224 | 0 | 1 | 1 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 100.0000 | 88.8889 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 33.3333 | 95.5224 | 0 | 1 | 1 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 88.8889 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | C6_15 | HG002complexvar | * | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 2 | 2 | 0 | 0 | 0 | ||
| gduggal-snapplat | INDEL | C6_15 | HG002complexvar | het | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 2 | 2 | 0 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 99.8440 | 0 | 2 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 99.8395 | 0 | 2 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I16_PLUS | * | * | 0.0000 | 0.0157 | 0.0000 | 0.0000 | 1 | 6376 | 0 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I16_PLUS | * | hetalt | 0.0000 | 0.0477 | 0.0000 | 0.0000 | 1 | 2097 | 0 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I16_PLUS | HG002compoundhet | * | 0.0000 | 0.0467 | 0.0000 | 0.0000 | 1 | 2142 | 0 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.0478 | 0.0000 | 0.0000 | 1 | 2092 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | * | hetalt | 0.0000 | 37.0438 | 0.0000 | 0.0000 | 9348 | 15887 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | HG002complexvar | hetalt | 0.0000 | 38.0476 | 0.0000 | 0.0000 | 1407 | 2291 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | HG002compoundhet | hetalt | 0.0000 | 37.0482 | 0.0000 | 0.0000 | 9328 | 15850 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 21.8358 | 0.0000 | 0.0000 | 835 | 2989 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 1 | 2 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 54.6445 | 0.0000 | 0.0000 | 8424 | 6992 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 46.7074 | 0.0000 | 0.0000 | 7802 | 8902 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 34.7305 | 0.0000 | 0.0000 | 58 | 109 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 1 | 2 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 31.7597 | 0.0000 | 0.0000 | 74 | 159 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 28.7879 | 0.0000 | 0.0000 | 38 | 94 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 21.8142 | 0.0000 | 0.0000 | 594 | 2129 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 50.1162 | 0.0000 | 0.0000 | 6898 | 6866 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 56.7762 | 0.0000 | 0.0000 | 6305 | 4800 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 49.6365 | 0.0000 | 0.0000 | 6965 | 7067 | 0 | 0 | 0 | ||