PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
86001-86044 / 86044 show all
jlack-gatkINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.4097
1201200
jlack-gatkSNP*lowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
94.6154
70700
jmaeng-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
75.5760
5305300
ltrigg-rtg1INDEL*map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
98.7013
60500
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
93.3333
10100
ltrigg-rtg1SNPtimap_l150_m1_e0hetalt
100.0000
100.0000
100.0000
65.1163
1501500
ltrigg-rtg2INDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
98.0519
30300
ltrigg-rtg2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10100
bgallagher-sentieonINDELD16_PLUSmap_l125_m2_e0hetalt
100.0000
100.0000
100.0000
93.6170
30300
mlin-fermikitINDELD6_15decoyhetalt
100.0000
100.0000
100.0000
98.6842
10100
bgallagher-sentieonINDELI1_5map_l125_m2_e0hetalt
100.0000
100.0000
100.0000
92.5490
1901900
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
83.3333
1201200
mlin-fermikitSNPtilowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
90.0000
10100
ndellapenna-hhgaINDELD16_PLUSmap_l250_m1_e0hetalt
100.0000
100.0000
100.0000
80.0000
10100
ndellapenna-hhgaINDELI1_5map_l125_m1_e0hetalt
100.0000
100.0000
100.0000
94.0972
1701700
ndellapenna-hhgaINDELI6_15tech_badpromotershetalt
100.0000
100.0000
100.0000
50.0000
30300
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
96.0000
20200
raldana-dualsentieonINDELD16_PLUSmap_l250_m2_e0hetalt
100.0000
100.0000
100.0000
90.0000
10100
ckim-dragenINDELI1_5func_cdshetalt
100.0000
100.0000
100.0000
33.3333
20200
ckim-dragenSNPtvfunc_cdshetalt
100.0000
100.0000
100.0000
64.2857
1001000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
77.7778
20200
ckim-gatkINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
55.5556
1201600
ckim-gatkINDELI6_15map_l150_m1_e0hetalt
100.0000
100.0000
100.0000
91.6667
30300
ckim-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
72.2222
50500
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
80.0000
10100
ckim-isaacINDELD16_PLUSmap_l150_m1_e0hetalt
100.0000
100.0000
100.0000
94.1176
10100
ckim-isaacSNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
75.0000
20200
ckim-vqsrSNP*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
72.2222
50500
dgrover-gatkINDELD6_15map_l150_m1_e0hetalt
100.0000
100.0000
100.0000
90.6977
80800
dgrover-gatkSNP*map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
90.3226
30300
eyeh-varpipeSNPtimap_l125_m2_e1hetalt
100.0000
100.0000
100.0000
69.2308
24017600
gduggal-bwafbSNP*map_l125_m0_e0hetalt
100.0000
100.0000
100.0000
86.1538
90900
gduggal-bwaplatINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
85.7143
10100
gduggal-bwaplatINDELI1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
98.7342
10100
gduggal-snapfbSNPtimap_l250_m1_e0hetalt
100.0000
100.0000
100.0000
95.2381
40400
hfeng-pmm1SNP*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
68.7500
50500
hfeng-pmm1SNPtimap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
90.3226
30300
hfeng-pmm2INDEL*decoyhetalt
100.0000
100.0000
100.0000
99.8400
10100
hfeng-pmm2SNPtimap_l150_m2_e1hetalt
100.0000
100.0000
100.0000
79.7297
1501500
hfeng-pmm3INDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
97.0297
30300
jlack-gatkINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
96.6667
30300
jli-customINDELI6_15map_l125_m2_e1hetalt
100.0000
100.0000
100.0000
87.8788
80800
jli-customSNPtvlowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
95.6522
10100
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
92.7711
1201200