PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
84801-84850 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | I1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 53.3333 | 8 | 0 | 7 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 1 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 57.6923 | 13 | 0 | 11 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 3 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 54.5455 | 10 | 0 | 10 | 0 | 0 | ||
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.0120 | 15 | 0 | 15 | 0 | 0 | ||
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.5000 | 1 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 1 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.5000 | 2 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.7143 | 2 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2500 | 3 | 0 | 3 | 0 | 0 | ||
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.0120 | 15 | 0 | 15 | 0 | 0 | ||
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 1 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.7500 | 5 | 0 | 5 | 0 | 0 | ||
| qzeng-custom | SNP | * | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.9228 | 7 | 0 | 7 | 0 | 0 | ||
| qzeng-custom | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 46.6667 | 8 | 0 | 8 | 0 | 0 | ||
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.5318 | 12 | 0 | 12 | 0 | 0 | ||
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 1 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9996 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9953 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 4 | 0 | 4 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0952 | 2 | 0 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 4 | 0 | 4 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 46.1538 | 12 | 0 | 14 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 80.3419 | 23 | 0 | 23 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 93.7824 | 12 | 0 | 12 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 92.8000 | 9 | 0 | 9 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 2 | 0 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.2105 | 3 | 0 | 3 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.9596 | 4 | 0 | 4 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.7143 | 3 | 0 | 3 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.2264 | 4 | 0 | 4 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.2264 | 4 | 0 | 4 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l150_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 95.0000 | 7 | 0 | 7 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l150_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 91.9540 | 7 | 0 | 7 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.7500 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 98.5714 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l250_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 97.5610 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l250_m1_e0 | * | 100.0000 | 100.0000 | 100.0000 | 96.9697 | 4 | 0 | 4 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 3 | 0 | 3 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.3077 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l250_m2_e0 | * | 100.0000 | 100.0000 | 100.0000 | 96.5278 | 5 | 0 | 5 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l250_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 96.4286 | 3 | 0 | 3 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.3077 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.8723 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l250_m2_e1 | * | 100.0000 | 100.0000 | 100.0000 | 96.5986 | 5 | 0 | 5 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l250_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 96.5517 | 3 | 0 | 3 | 0 | 0 | ||