PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
84201-84250 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | SNP | * | map_l100_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 65.8537 | 42 | 0 | 42 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | map_l100_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 65.3226 | 43 | 0 | 43 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 71.8750 | 9 | 0 | 9 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 63.4146 | 30 | 0 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 67.3913 | 30 | 0 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 67.3913 | 30 | 0 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.3636 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.7500 | 20 | 0 | 20 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.5882 | 20 | 0 | 20 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 71.0145 | 20 | 0 | 20 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.1852 | 4 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 5 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 5 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9027 | 7 | 0 | 7 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 46.6667 | 8 | 0 | 8 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 1 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 1 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.6552 | 2 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.9091 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.7778 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 94.8980 | 6 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 61.1111 | 14 | 0 | 14 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | map_l100_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.6341 | 29 | 0 | 29 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | map_l100_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.2921 | 30 | 0 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | map_l100_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 65.5556 | 31 | 0 | 31 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.0000 | 8 | 0 | 8 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 58.6207 | 24 | 0 | 24 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 63.6364 | 24 | 0 | 24 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 63.6364 | 24 | 0 | 24 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.2500 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 65.1163 | 15 | 0 | 15 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.0851 | 15 | 0 | 15 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.7500 | 15 | 0 | 15 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.7778 | 4 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 5 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 5 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.6577 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 41.4286 | 41 | 0 | 41 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 58.3333 | 10 | 0 | 10 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 26.0096 | 1704 | 0 | 1704 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.5000 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 63.3659 | 786 | 0 | 825 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 68.7717 | 525 | 0 | 539 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.0000 | 2 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.0000 | 2 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.9091 | 3 | 0 | 4 | 0 | 0 | ||