PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
84151-84200 / 86044 show all
ltrigg-rtg1INDEL*decoyhetalt
100.0000
100.0000
100.0000
99.8440
10100
ltrigg-rtg1INDEL*decoyhomalt
100.0000
100.0000
100.0000
99.9201
30300
ltrigg-rtg1INDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
97.9310
30300
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
97.7778
30300
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
95.3125
30300
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
95.7447
20200
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
83.3333
10100
ltrigg-rtg1INDEL*lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
38.9610
4704700
ltrigg-rtg1INDEL*map_l250_m0_e0homalt
100.0000
100.0000
100.0000
96.9977
2502600
ltrigg-rtg1INDEL*map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
98.4802
60500
ltrigg-rtg1INDEL*map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
98.7013
60500
ltrigg-rtg1INDEL*map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
98.7277
60500
ltrigg-rtg1INDEL*segdupwithalt*
100.0000
100.0000
100.0000
99.9964
10100
ltrigg-rtg1INDEL*segdupwithalthet
100.0000
100.0000
100.0000
99.9933
10100
ltrigg-rtg1INDEL*tech_badpromotershetalt
100.0000
100.0000
100.0000
55.5556
40400
ltrigg-rtg1INDELI6_15map_l125_m0_e0homalt
100.0000
100.0000
100.0000
87.2340
60600
ltrigg-rtg1INDELI6_15map_l125_m1_e0hetalt
100.0000
100.0000
100.0000
91.0256
80700
ltrigg-rtg1INDELI6_15map_l125_m1_e0homalt
100.0000
100.0000
100.0000
86.1111
1501500
ltrigg-rtg1INDELI6_15map_l125_m2_e0hetalt
100.0000
100.0000
100.0000
92.3077
80700
ltrigg-rtg1INDELI6_15map_l125_m2_e0homalt
100.0000
100.0000
100.0000
88.3721
1501500
ltrigg-rtg1INDELI6_15map_l125_m2_e1hetalt
100.0000
100.0000
100.0000
92.4731
80700
ltrigg-rtg1INDELI6_15map_l125_m2_e1homalt
100.0000
100.0000
100.0000
88.8060
1501500
ltrigg-rtg1INDELI6_15map_l150_m0_e0homalt
100.0000
100.0000
100.0000
89.1892
40400
ltrigg-rtg1INDELI6_15map_l150_m1_e0hetalt
100.0000
100.0000
100.0000
95.3125
30300
ltrigg-rtg1INDELI6_15map_l150_m1_e0homalt
100.0000
100.0000
100.0000
91.1392
70700
ltrigg-rtg1INDELI6_15map_l150_m2_e0hetalt
100.0000
100.0000
100.0000
95.8904
30300
ltrigg-rtg1INDELI6_15map_l150_m2_e0homalt
100.0000
100.0000
100.0000
92.7835
70700
ltrigg-rtg1INDELI6_15map_l150_m2_e1hetalt
100.0000
100.0000
100.0000
96.0000
30300
ltrigg-rtg1INDELI6_15map_l150_m2_e1homalt
100.0000
100.0000
100.0000
92.1569
80800
ltrigg-rtg1INDELI6_15map_l250_m0_e0*
100.0000
100.0000
100.0000
98.1132
10100
ltrigg-rtg1INDELI6_15map_l250_m0_e0homalt
100.0000
100.0000
100.0000
95.0000
10100
ltrigg-rtg1INDELI6_15map_l250_m1_e0homalt
100.0000
100.0000
100.0000
93.1818
30300
ltrigg-rtg1INDELI6_15map_l250_m2_e0homalt
100.0000
100.0000
100.0000
93.8776
30300
ltrigg-rtg1INDELI6_15map_l250_m2_e1homalt
100.0000
100.0000
100.0000
94.1176
30300
ltrigg-rtg1INDELI6_15tech_badpromoters*
100.0000
100.0000
100.0000
56.6667
1301300
ltrigg-rtg1INDELI6_15tech_badpromotershet
100.0000
100.0000
100.0000
58.8235
70700
ltrigg-rtg1INDELI6_15tech_badpromotershetalt
100.0000
100.0000
100.0000
40.0000
30300
ltrigg-rtg1INDELI6_15tech_badpromotershomalt
100.0000
100.0000
100.0000
62.5000
30300
ltrigg-rtg1SNP*func_cdshetalt
100.0000
100.0000
100.0000
58.3333
1001000
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
87.5000
10100
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
66.6667
10100
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
70.0000
20300
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
70.0000
20300
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.9091
30400
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
93.3333
10100
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
66.6667
50500
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
72.2222
50500
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
95.6835
70600
ltrigg-rtg1SNP*map_l100_m0_e0hetalt
100.0000
100.0000
100.0000
63.6364
1601600
ltrigg-rtg1SNP*map_l100_m1_e0hetalt
100.0000
100.0000
100.0000
64.0351
4104100