PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
84101-84150 / 86044 show all
ltrigg-rtg1INDELI1_5tech_badpromotershet
100.0000
100.0000
100.0000
46.6667
80800
ltrigg-rtg1INDELI1_5tech_badpromotershetalt
100.0000
100.0000
100.0000
50.0000
10100
ltrigg-rtg1INDELI1_5tech_badpromotershomalt
100.0000
100.0000
100.0000
56.6667
1301300
ltrigg-rtg1INDELI6_15func_cdshet
100.0000
100.0000
100.0000
32.3529
2402300
ltrigg-rtg1INDELI6_15func_cdshomalt
100.0000
100.0000
100.0000
25.0000
1501500
ltrigg-rtg1INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
62.8866
3603600
ltrigg-rtg1INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
61.7886
9209400
ltrigg-rtg1INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
62.9032
6806900
ltrigg-rtg1INDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.8429
20200
ltrigg-rtg1INDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.6330
20200
ltrigg-rtg1INDELI6_15lowcmp_SimpleRepeat_triTR_11to50homalt
100.0000
100.0000
100.0000
53.6585
5905700
ltrigg-rtg1INDELI6_15lowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
92.8571
10100
jmaeng-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
68.7500
50500
jmaeng-gatkSNPtvlowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
66.6667
50500
jmaeng-gatkSNPtvlowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
98.5507
10100
jmaeng-gatkSNPtvlowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
98.2456
10100
jmaeng-gatkSNPtvsegduphetalt
100.0000
100.0000
100.0000
98.5685
70700
jpowers-varprowlINDEL*decoyhomalt
100.0000
100.0000
100.0000
99.9173
30300
jpowers-varprowlINDEL*segdupwithalt*
100.0000
100.0000
100.0000
99.9972
10100
jpowers-varprowlINDEL*segdupwithalthet
100.0000
100.0000
100.0000
99.9963
10100
jpowers-varprowlINDELD16_PLUSdecoyhomalt
100.0000
100.0000
100.0000
97.1014
20200
jpowers-varprowlINDELD16_PLUSmap_l125_m0_e0homalt
100.0000
100.0000
100.0000
99.5842
20200
jpowers-varprowlINDELD16_PLUSmap_l150_m0_e0*
100.0000
100.0000
100.0000
99.3665
70700
jpowers-varprowlINDELD16_PLUSmap_l150_m0_e0het
100.0000
100.0000
100.0000
98.9231
70700
jpowers-varprowlINDELD16_PLUSmap_l250_m0_e0*
100.0000
100.0000
100.0000
99.8624
10100
jpowers-varprowlINDELD16_PLUSmap_l250_m0_e0het
100.0000
100.0000
100.0000
99.7567
10100
jpowers-varprowlINDELD16_PLUSmap_l250_m2_e0homalt
100.0000
100.0000
100.0000
99.7475
10100
jpowers-varprowlINDELD16_PLUSmap_l250_m2_e1homalt
100.0000
100.0000
100.0000
99.7500
10100
jpowers-varprowlINDELD1_5decoyhet
100.0000
100.0000
100.0000
99.9748
20200
jpowers-varprowlINDELD1_5decoyhomalt
100.0000
100.0000
100.0000
99.9330
10100
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.6486
10100
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.3333
10100
jpowers-varprowlINDELD1_5segdupwithalt*
100.0000
100.0000
100.0000
99.9938
10100
jpowers-varprowlINDELD1_5segdupwithalthet
100.0000
100.0000
100.0000
99.9920
10100
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.8304
20200
jpowers-varprowlINDELD6_15map_l250_m0_e0*
100.0000
100.0000
100.0000
97.8417
60600
jpowers-varprowlINDELD6_15map_l250_m0_e0het
100.0000
100.0000
100.0000
98.2301
40400
jpowers-varprowlINDELD6_15map_l250_m0_e0homalt
100.0000
100.0000
100.0000
96.1538
20200
jpowers-varprowlINDELD6_15map_l250_m1_e0homalt
100.0000
100.0000
100.0000
93.7500
50500
jpowers-varprowlINDELD6_15map_l250_m2_e0homalt
100.0000
100.0000
100.0000
93.1818
60600
jpowers-varprowlINDELD6_15map_l250_m2_e1homalt
100.0000
100.0000
100.0000
93.3333
60600
jpowers-varprowlINDELI16_PLUSmap_l250_m1_e0*
100.0000
100.0000
100.0000
95.8333
10100
jpowers-varprowlINDELI16_PLUSmap_l250_m1_e0het
100.0000
100.0000
100.0000
95.0000
10100
jpowers-varprowlINDELI16_PLUSmap_l250_m2_e0*
100.0000
100.0000
100.0000
96.2963
10100
jpowers-varprowlINDELI16_PLUSmap_l250_m2_e0het
100.0000
100.0000
100.0000
95.2381
10100
jpowers-varprowlINDELI16_PLUSmap_l250_m2_e1*
100.0000
100.0000
100.0000
96.6667
10100
jpowers-varprowlINDELI16_PLUSmap_l250_m2_e1het
100.0000
100.0000
100.0000
95.8333
10100
jpowers-varprowlINDELI6_15map_l250_m0_e0*
100.0000
100.0000
100.0000
98.7500
10100
jpowers-varprowlINDELI6_15map_l250_m0_e0homalt
100.0000
100.0000
100.0000
94.1176
10100
jpowers-varprowlSNPtilowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
97.4576
60600