PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
83901-83950 / 86044 show all
ltrigg-rtg2INDELI6_15func_cdshomalt
100.0000
100.0000
100.0000
28.5714
1501500
ltrigg-rtg2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
62.1053
3603600
ltrigg-rtg2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
60.3376
9209400
ltrigg-rtg2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
61.2360
6806900
ltrigg-rtg2INDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.8529
20200
ltrigg-rtg2INDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.6721
20200
ltrigg-rtg2INDELI6_15lowcmp_SimpleRepeat_triTR_11to50homalt
100.0000
100.0000
100.0000
52.5000
5905700
ltrigg-rtg2INDELI6_15lowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
92.8571
10100
ltrigg-rtg2INDELI6_15map_l125_m0_e0homalt
100.0000
100.0000
100.0000
82.8571
60600
ltrigg-rtg2INDELI6_15map_l125_m1_e0hetalt
100.0000
100.0000
100.0000
91.2500
80700
ltrigg-rtg2INDELI6_15map_l125_m1_e0homalt
100.0000
100.0000
100.0000
81.0127
1501500
ltrigg-rtg2INDELI6_15map_l125_m2_e0hetalt
100.0000
100.0000
100.0000
92.6316
80700
ltrigg-rtg2INDELI6_15map_l125_m2_e0homalt
100.0000
100.0000
100.0000
84.2105
1501500
ltrigg-rtg2INDELI6_15map_l125_m2_e1hetalt
100.0000
100.0000
100.0000
92.7835
80700
ltrigg-rtg2INDELI6_15map_l125_m2_e1homalt
100.0000
100.0000
100.0000
84.8485
1501500
ltrigg-rtg2INDELI6_15map_l150_m0_e0homalt
100.0000
100.0000
100.0000
84.6154
40400
ltrigg-rtg2INDELI6_15map_l150_m1_e0hetalt
100.0000
100.0000
100.0000
95.4545
30300
ltrigg-rtg2INDELI6_15map_l150_m1_e0homalt
100.0000
100.0000
100.0000
87.0370
70700
ltrigg-rtg2INDELI6_15map_l150_m2_e0hetalt
100.0000
100.0000
100.0000
96.1039
30300
ltrigg-rtg2INDELI6_15map_l150_m2_e0homalt
100.0000
100.0000
100.0000
89.8551
70700
ltrigg-rtg2INDELI6_15map_l150_m2_e1hetalt
100.0000
100.0000
100.0000
96.2025
30300
ltrigg-rtg2INDELI6_15map_l150_m2_e1homalt
100.0000
100.0000
100.0000
89.0411
80800
ltrigg-rtg2INDELI6_15map_l250_m0_e0*
100.0000
100.0000
100.0000
98.0392
10100
ltrigg-rtg2INDELI6_15map_l250_m0_e0homalt
100.0000
100.0000
100.0000
92.8571
10100
ltrigg-rtg2INDELI6_15map_l250_m1_e0homalt
100.0000
100.0000
100.0000
88.4615
30300
ltrigg-rtg2INDELI6_15map_l250_m2_e0homalt
100.0000
100.0000
100.0000
90.0000
30300
ltrigg-rtg2INDELI6_15map_l250_m2_e1homalt
100.0000
100.0000
100.0000
90.6250
30300
ltrigg-rtg2INDELI6_15segduphetalt
100.0000
100.0000
100.0000
91.5058
4504400
ltrigg-rtg2INDELI6_15tech_badpromoters*
100.0000
100.0000
100.0000
56.6667
1301300
ltrigg-rtg2INDELI6_15tech_badpromotershet
100.0000
100.0000
100.0000
58.8235
70700
ltrigg-rtg2INDELI6_15tech_badpromotershetalt
100.0000
100.0000
100.0000
40.0000
30300
ltrigg-rtg2INDELI6_15tech_badpromotershomalt
100.0000
100.0000
100.0000
62.5000
30300
ltrigg-rtg2SNP*func_cdshetalt
100.0000
100.0000
100.0000
58.3333
1001000
ltrigg-rtg2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
88.8889
10100
ltrigg-rtg2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10100
ltrigg-rtg2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
72.7273
20300
ltrigg-rtg2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
72.7273
20300
ltrigg-rtg2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
91.1111
30400
ltrigg-rtg2SNP*lowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
92.8571
10100
ltrigg-rtg2SNP*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
66.6667
50500
ltrigg-rtg2SNP*lowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
70.5882
50500
ltrigg-rtg2SNP*lowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
95.0820
70600
ltrigg-rtg2SNP*map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
85.0000
30300
ltrigg-rtg2SNP*segduphetalt
100.0000
100.0000
100.0000
96.8037
70700
ltrigg-rtg2SNP*tech_badpromotershomalt
100.0000
100.0000
100.0000
48.0519
8008000
ltrigg-rtg2SNPtifunc_cdshetalt
100.0000
100.0000
100.0000
50.0000
80800
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
80.0000
10100
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
50.0000
10100
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10200
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10200