PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
83701-83750 / 86044 show all
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
62.0839
786078600
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10100
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
67.2489
525052500
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.9091
20200
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
89.4737
20200
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
93.8776
30300
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
88.6364
1501500
jli-customSNPtvlowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
95.6522
10100
jli-customSNPtvlowcmp_SimpleRepeat_diTR_51to200homalt
100.0000
100.0000
100.0000
95.5224
90900
jli-customSNPtvlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
66.6667
50500
jli-customSNPtvlowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
64.2857
50500
jli-customSNPtvlowcmp_SimpleRepeat_quadTR_51to200homalt
100.0000
100.0000
100.0000
93.5484
60600
jli-customSNPtvlowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
98.5915
10100
jli-customSNPtvlowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
98.2759
10100
jli-customSNPtvmap_l125_m0_e0hetalt
100.0000
100.0000
100.0000
79.0698
90900
jli-customSNPtvmap_l125_m1_e0hetalt
100.0000
100.0000
100.0000
74.1379
3003000
jli-customSNPtvmap_l125_m2_e0hetalt
100.0000
100.0000
100.0000
78.4173
3003000
jli-customSNPtvmap_l125_m2_e1hetalt
100.0000
100.0000
100.0000
78.4173
3003000
jli-customSNPtvmap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
91.1765
30300
jli-customSNPtvmap_l150_m1_e0hetalt
100.0000
100.0000
100.0000
78.4946
2002000
jli-customSNPtvmap_l150_m2_e0hetalt
100.0000
100.0000
100.0000
81.9820
2002000
jli-customSNPtvmap_l150_m2_e1hetalt
100.0000
100.0000
100.0000
81.9820
2002000
jli-customSNPtvmap_l250_m1_e0hetalt
100.0000
100.0000
100.0000
91.8367
40400
jli-customSNPtvmap_l250_m2_e0hetalt
100.0000
100.0000
100.0000
91.5254
50500
jli-customSNPtvmap_l250_m2_e1hetalt
100.0000
100.0000
100.0000
91.5254
50500
jli-customSNPtvsegduphetalt
100.0000
100.0000
100.0000
97.1429
70700
jmaeng-gatkINDEL*decoy*
100.0000
100.0000
100.0000
99.9727
1001000
jmaeng-gatkINDEL*decoyhet
100.0000
100.0000
100.0000
99.9809
60600
jmaeng-gatkINDEL*decoyhetalt
100.0000
100.0000
100.0000
99.8525
10100
jmaeng-gatkINDEL*decoyhomalt
100.0000
100.0000
100.0000
99.9340
30300
jmaeng-gatkINDEL*func_cdshomalt
100.0000
100.0000
100.0000
39.2473
226022600
jmaeng-gatkINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
99.3631
2002000
jmaeng-gatkINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.4138
1201200
jmaeng-gatkINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
95.6522
30300
jmaeng-gatkINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.5117
50500
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
99.4367
1701700
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.4903
1001000
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
94.8276
30300
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.5992
40400
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
97.5610
30300
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.6471
20200
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
96.2963
10100
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.8805
1601600
jmaeng-gatkINDEL*segdupwithalt*
100.0000
100.0000
100.0000
99.9982
10100
jmaeng-gatkINDEL*segdupwithalthet
100.0000
100.0000
100.0000
99.9975
10100
jmaeng-gatkINDEL*tech_badpromotershetalt
100.0000
100.0000
100.0000
50.0000
40400
jmaeng-gatkINDEL*tech_badpromotershomalt
100.0000
100.0000
100.0000
56.5789
3303300
jmaeng-gatkINDELD16_PLUSdecoy*
100.0000
100.0000
100.0000
99.5633
60600
jmaeng-gatkINDELD16_PLUSdecoyhet
100.0000
100.0000
100.0000
99.6406
40400
jmaeng-gatkINDELD16_PLUSdecoyhomalt
100.0000
100.0000
100.0000
99.1304
20200