PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
83651-83700 / 86044 show all
jli-customSNP*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
66.6667
50500
jli-customSNP*lowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
64.2857
50500
jli-customSNP*lowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
95.2381
90900
jli-customSNP*lowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
94.7368
70700
jli-customSNP*lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
96.4286
20200
jli-customSNP*map_l125_m0_e0hetalt
100.0000
100.0000
100.0000
79.0698
90900
jli-customSNP*map_l125_m1_e0hetalt
100.0000
100.0000
100.0000
74.1379
3003000
jli-customSNP*map_l125_m2_e0hetalt
100.0000
100.0000
100.0000
78.4173
3003000
jli-customSNP*map_l125_m2_e1hetalt
100.0000
100.0000
100.0000
78.4173
3003000
jli-customSNP*map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
91.1765
30300
jli-customSNP*map_l150_m1_e0hetalt
100.0000
100.0000
100.0000
78.4946
2002000
jli-customSNP*map_l150_m2_e0hetalt
100.0000
100.0000
100.0000
81.9820
2002000
jli-customSNP*map_l150_m2_e1hetalt
100.0000
100.0000
100.0000
81.9820
2002000
jli-customSNP*map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
91.8367
40400
jli-customSNP*map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
91.5254
50500
jli-customSNP*map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
91.5254
50500
jli-customSNP*segduphetalt
100.0000
100.0000
100.0000
97.1429
70700
jli-customSNPtifunc_cdshetalt
100.0000
100.0000
100.0000
55.5556
80800
jli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
85.3659
1201200
jli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
50.0000
10100
jli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
50.0000
10100
jli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
47.1675
858085800
jli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
94.1176
10100
jli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
93.3333
10100
jli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
92.5926
20200
jli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
85.3659
1201200
jli-customSNPtilowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
94.7368
10100
jli-customSNPtilowcmp_SimpleRepeat_diTR_51to200homalt
100.0000
100.0000
100.0000
96.5714
60600
jli-customSNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
77.7778
20200
jli-customSNPtilowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
83.3333
10100
jli-customSNPtilowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
93.2203
80800
jli-customSNPtilowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
92.0000
60600
jli-customSNPtilowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
95.3488
20200
jli-customSNPtimap_l125_m0_e0hetalt
100.0000
100.0000
100.0000
73.3333
80800
jli-customSNPtimap_l125_m1_e0hetalt
100.0000
100.0000
100.0000
67.5676
2402400
jli-customSNPtimap_l125_m2_e0hetalt
100.0000
100.0000
100.0000
73.6264
2402400
jli-customSNPtimap_l125_m2_e1hetalt
100.0000
100.0000
100.0000
73.6264
2402400
jli-customSNPtimap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
86.3636
30300
jli-customSNPtimap_l150_m1_e0hetalt
100.0000
100.0000
100.0000
73.6842
1501500
jli-customSNPtimap_l150_m2_e0hetalt
100.0000
100.0000
100.0000
77.9412
1501500
jli-customSNPtimap_l150_m2_e1hetalt
100.0000
100.0000
100.0000
77.9412
1501500
jli-customSNPtimap_l250_m1_e0hetalt
100.0000
100.0000
100.0000
86.6667
40400
jli-customSNPtimap_l250_m2_e0hetalt
100.0000
100.0000
100.0000
85.2941
50500
jli-customSNPtimap_l250_m2_e1hetalt
100.0000
100.0000
100.0000
85.2941
50500
jli-customSNPtisegduphetalt
100.0000
100.0000
100.0000
98.7500
20200
jli-customSNPtvfunc_cdshetalt
100.0000
100.0000
100.0000
62.9630
1001000
jli-customSNPtvfunc_cdshomalt
100.0000
100.0000
100.0000
24.8014
17040170400
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
88.6364
1501500
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
48.9384
481048100
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
80.0000
10100