PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
83151-83200 / 86044 show all
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
97.7273
30300
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.9167
20200
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
96.1538
10100
bgallagher-sentieonINDEL*lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.8731
1601600
bgallagher-sentieonINDEL*lowcmp_SimpleRepeat_homopolymer_gt10homalt
100.0000
100.0000
100.0000
99.9633
2102100
bgallagher-sentieonINDEL*map_l125_m0_e0hetalt
100.0000
100.0000
100.0000
94.9541
1101100
bgallagher-sentieonINDEL*map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
94.4785
90900
bgallagher-sentieonINDEL*map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
96.7033
60600
bgallagher-sentieonINDEL*map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
97.3094
60600
bgallagher-sentieonINDEL*map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
97.3684
60600
bgallagher-sentieonINDEL*segdupwithalt*
100.0000
100.0000
100.0000
99.9974
10100
bgallagher-sentieonINDEL*segdupwithalthet
100.0000
100.0000
100.0000
99.9960
10100
bgallagher-sentieonINDEL*tech_badpromotershetalt
100.0000
100.0000
100.0000
50.0000
40400
bgallagher-sentieonINDEL*tech_badpromotershomalt
100.0000
100.0000
100.0000
57.1429
3303300
bgallagher-sentieonINDELD16_PLUSdecoy*
100.0000
100.0000
100.0000
99.2718
60600
bgallagher-sentieonINDELD16_PLUSdecoyhet
100.0000
100.0000
100.0000
99.3162
40400
bgallagher-sentieonINDELD16_PLUSdecoyhomalt
100.0000
100.0000
100.0000
99.0244
20200
bgallagher-sentieonINDELD16_PLUSfunc_cds*
100.0000
100.0000
100.0000
79.6610
1201200
bgallagher-sentieonINDELD16_PLUSfunc_cdshet
100.0000
100.0000
100.0000
81.8182
80800
bgallagher-sentieonINDELD16_PLUSfunc_cdshomalt
100.0000
100.0000
100.0000
73.3333
40400
bgallagher-sentieonINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.8333
10100
bgallagher-sentieonINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
93.3333
10100
bgallagher-sentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.8282
10100
bgallagher-sentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
92.3077
10100
bgallagher-sentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
72.2892
1902300
bgallagher-sentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
44.0000
1201400
bgallagher-sentieonINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
54.2857
1201600
bgallagher-sentieonINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
92.4370
90900
bgallagher-sentieonINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10homalt
100.0000
100.0000
100.0000
97.7099
1501500
bgallagher-sentieonINDELD16_PLUSlowcmp_SimpleRepeat_triTR_11to50hetalt
100.0000
100.0000
100.0000
22.8571
5105400
bgallagher-sentieonINDELD16_PLUSlowcmp_SimpleRepeat_triTR_11to50homalt
100.0000
100.0000
100.0000
67.3913
4504500
bgallagher-sentieonINDELD16_PLUSmap_l100_m0_e0hetalt
100.0000
100.0000
100.0000
90.7407
40500
bgallagher-sentieonINDELD16_PLUSmap_l125_m0_e0hetalt
100.0000
100.0000
100.0000
96.6667
10100
bgallagher-sentieonINDELD16_PLUSmap_l125_m0_e0homalt
100.0000
100.0000
100.0000
97.6190
20200
bgallagher-sentieonINDELD16_PLUSmap_l125_m1_e0hetalt
100.0000
100.0000
100.0000
93.1818
30300
bgallagher-sentieonINDELD16_PLUSmap_l125_m2_e0hetalt
100.0000
100.0000
100.0000
93.6170
30300
bgallagher-sentieonINDELD16_PLUSmap_l150_m1_e0hetalt
100.0000
100.0000
100.0000
96.8750
10100
bgallagher-sentieonINDELD16_PLUSmap_l150_m2_e0hetalt
100.0000
100.0000
100.0000
96.8750
10100
bgallagher-sentieonINDELD16_PLUSmap_l250_m1_e0hetalt
100.0000
100.0000
100.0000
93.7500
10100
bgallagher-sentieonINDELD16_PLUSmap_l250_m2_e0hetalt
100.0000
100.0000
100.0000
93.7500
10100
bgallagher-sentieonINDELD16_PLUSmap_l250_m2_e0homalt
100.0000
100.0000
100.0000
98.3607
10100
bgallagher-sentieonINDELD16_PLUSmap_l250_m2_e1hetalt
100.0000
100.0000
100.0000
93.7500
10100
bgallagher-sentieonINDELD16_PLUSmap_l250_m2_e1homalt
100.0000
100.0000
100.0000
98.3607
10100
bgallagher-sentieonINDELD16_PLUSsegduphomalt
100.0000
100.0000
100.0000
96.6759
1201200
bgallagher-sentieonINDELD16_PLUStech_badpromoters*
100.0000
100.0000
100.0000
42.8571
40400
bgallagher-sentieonINDELD16_PLUStech_badpromotershet
100.0000
100.0000
100.0000
0.0000
40400
bgallagher-sentieonINDELD1_5decoy*
100.0000
100.0000
100.0000
99.9378
40400
bgallagher-sentieonINDELD1_5decoyhet
100.0000
100.0000
100.0000
99.9561
20200
bgallagher-sentieonINDELD1_5decoyhetalt
100.0000
100.0000
100.0000
99.6094
10100
bgallagher-sentieonINDELD1_5decoyhomalt
100.0000
100.0000
100.0000
99.9380
10100