PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
83101-83150 / 86044 show all
asubramanian-gatkINDELI1_5map_l150_m2_e0hetalt
100.0000
100.0000
100.0000
96.3115
90900
asubramanian-gatkINDELI1_5map_l150_m2_e1hetalt
100.0000
100.0000
100.0000
96.0317
1001000
asubramanian-gatkINDELI1_5map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
98.1982
20200
asubramanian-gatkINDELI1_5map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
98.5714
20200
asubramanian-gatkINDELI1_5map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
98.6014
20200
asubramanian-gatkINDELI1_5tech_badpromotershet
100.0000
100.0000
100.0000
46.6667
80800
asubramanian-gatkINDELI1_5tech_badpromotershetalt
100.0000
100.0000
100.0000
50.0000
10100
asubramanian-gatkINDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.8725
20200
asubramanian-gatkINDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.4398
20200
asubramanian-gatkINDELI6_15lowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
66.6667
1301700
asubramanian-gatkINDELI6_15lowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
95.2381
10100
asubramanian-gatkINDELI6_15lowcmp_SimpleRepeat_triTR_51to200hetalt
100.0000
100.0000
100.0000
33.3333
1201600
asubramanian-gatkINDELI6_15map_l150_m1_e0hetalt
100.0000
100.0000
100.0000
92.1053
30300
asubramanian-gatkINDELI6_15map_l150_m2_e0hetalt
100.0000
100.0000
100.0000
93.4783
30300
asubramanian-gatkINDELI6_15map_l150_m2_e1hetalt
100.0000
100.0000
100.0000
93.7500
30300
asubramanian-gatkINDELI6_15tech_badpromoters*
100.0000
100.0000
100.0000
56.6667
1301300
asubramanian-gatkINDELI6_15tech_badpromotershet
100.0000
100.0000
100.0000
56.2500
70700
asubramanian-gatkINDELI6_15tech_badpromotershetalt
100.0000
100.0000
100.0000
50.0000
30300
asubramanian-gatkINDELI6_15tech_badpromotershomalt
100.0000
100.0000
100.0000
62.5000
30300
asubramanian-gatkSNP*func_cdshetalt
100.0000
100.0000
100.0000
58.3333
1001000
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.0000
10100
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
85.7143
10100
asubramanian-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
73.6842
50500
asubramanian-gatkSNP*lowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
94.8718
70800
asubramanian-gatkSNPtifunc_cdshetalt
100.0000
100.0000
100.0000
52.9412
80800
asubramanian-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
83.3333
10100
asubramanian-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10100
asubramanian-gatkSNPtilowcmp_SimpleRepeat_diTR_51to200homalt
100.0000
100.0000
100.0000
96.4286
60600
asubramanian-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
81.8182
20200
asubramanian-gatkSNPtilowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
93.8776
80900
asubramanian-gatkSNPtilowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
92.1348
60700
asubramanian-gatkSNPtilowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
96.4912
20200
asubramanian-gatkSNPtisegduphetalt
100.0000
100.0000
100.0000
98.6667
20200
asubramanian-gatkSNPtvfunc_cdshetalt
100.0000
100.0000
100.0000
58.3333
1001000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
83.3333
10100
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
80.0000
10100
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
67.3913
525052500
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_diTR_51to200homalt
100.0000
100.0000
100.0000
95.3846
90900
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
73.6842
50500
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_quadTR_51to200homalt
100.0000
100.0000
100.0000
93.2584
60600
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
98.5714
10100
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
98.2143
10100
bgallagher-sentieonINDEL*decoy*
100.0000
100.0000
100.0000
99.9337
1001000
bgallagher-sentieonINDEL*decoyhet
100.0000
100.0000
100.0000
99.9414
60600
bgallagher-sentieonINDEL*decoyhetalt
100.0000
100.0000
100.0000
99.8252
10100
bgallagher-sentieonINDEL*decoyhomalt
100.0000
100.0000
100.0000
99.9295
30300
bgallagher-sentieonINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.4118
1201200
bgallagher-sentieonINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
96.7391
30300
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.4856
1001000
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
96.3415
30300