PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
83001-83050 / 86044 show all
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10100
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
67.4115
525052500
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.9091
20200
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
89.4737
20200
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
92.8571
30300
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
86.8421
1501500
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
95.6522
10100
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_diTR_51to200homalt
100.0000
100.0000
100.0000
95.3368
90900
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
68.7500
50500
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
64.2857
50500
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_51to200homalt
100.0000
100.0000
100.0000
93.1818
60600
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
98.5507
10100
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
98.2143
10100
bgallagher-sentieonSNPtvmap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
88.8889
30300
bgallagher-sentieonSNPtvsegduphetalt
100.0000
100.0000
100.0000
96.6667
70700
cchapple-customINDEL*decoy*
100.0000
100.0000
100.0000
99.9561
1001000
cchapple-customINDEL*decoyhet
100.0000
100.0000
100.0000
99.9628
60700
cchapple-customINDEL*decoyhomalt
100.0000
100.0000
100.0000
99.9250
30300
cchapple-customINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.3674
1201500
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.4286
1001300
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
97.4790
30300
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.0000
20200
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
94.7368
10100
cchapple-customINDEL*map_l250_m0_e0homalt
100.0000
100.0000
100.0000
97.3795
2502500
cchapple-customINDEL*segdupwithalt*
100.0000
100.0000
100.0000
99.9974
10100
cchapple-customINDEL*segdupwithalthet
100.0000
100.0000
100.0000
99.9964
10100
cchapple-customINDEL*tech_badpromotershomalt
100.0000
100.0000
100.0000
57.1429
3303300
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.0000
10100
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.1429
10100
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.9969
10400
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.9924
10100
asubramanian-gatkINDELD1_5map_l125_m0_e0hetalt
100.0000
100.0000
100.0000
97.8571
30300
asubramanian-gatkINDELD1_5map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
98.1818
20200
asubramanian-gatkINDELD1_5map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
97.6744
30300
asubramanian-gatkINDELD1_5map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
98.1013
30300
asubramanian-gatkINDELD1_5map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
98.1707
30300
asubramanian-gatkINDELD1_5segdupwithalt*
100.0000
100.0000
100.0000
99.9949
10100
asubramanian-gatkINDELD1_5segdupwithalthet
100.0000
100.0000
100.0000
99.9927
10100
asubramanian-gatkINDELD1_5tech_badpromotershet
100.0000
100.0000
100.0000
55.5556
80800
asubramanian-gatkINDELD1_5tech_badpromotershetalt
100.0000
100.0000
100.0000
0.0000
20200
asubramanian-gatkINDELD6_15decoy*
100.0000
100.0000
100.0000
99.9306
10100
asubramanian-gatkINDELD6_15decoyhetalt
100.0000
100.0000
100.0000
98.8764
10100
asubramanian-gatkINDELD6_15func_cdshetalt
100.0000
100.0000
100.0000
60.0000
20200
asubramanian-gatkINDELD6_15func_cdshomalt
100.0000
100.0000
100.0000
61.2903
1201200
asubramanian-gatkINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
97.0443
60600
asubramanian-gatkINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.7941
30300
asubramanian-gatkINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
89.4737
20200
asubramanian-gatkINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
97.9167
10100
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
97.7778
40400
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.3607
20200