PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
82701-82750 / 86044 show all
gduggal-bwafbINDELC1_5lowcmp_SimpleRepeat_homopolymer_6to10*
100.0000
100.0000
100.0000
91.6667
10100
gduggal-bwafbINDELC1_5lowcmp_SimpleRepeat_homopolymer_6to10het
100.0000
100.0000
100.0000
83.3333
10100
gduggal-bwafbINDELC6_15lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
98.6667
10100
gduggal-bwafbINDELC6_15lowcmp_SimpleRepeat_homopolymer_gt10het
100.0000
100.0000
100.0000
97.2222
10100
gduggal-bwafbINDELD16_PLUSdecoyhomalt
100.0000
100.0000
100.0000
97.0149
20200
gduggal-bwafbINDELD16_PLUSmap_l250_m0_e0*
100.0000
100.0000
100.0000
97.5000
10100
gduggal-bwafbINDELD16_PLUSmap_l250_m0_e0het
100.0000
100.0000
100.0000
94.7368
10100
gduggal-bwafbINDELD16_PLUSmap_l250_m1_e0het
100.0000
100.0000
100.0000
92.6829
30300
gduggal-bwafbINDELD16_PLUSmap_l250_m2_e0het
100.0000
100.0000
100.0000
93.3333
30300
gduggal-bwafbINDELD16_PLUSmap_l250_m2_e1het
100.0000
100.0000
100.0000
93.6170
30300
gduggal-bwafbINDELD1_5decoy*
100.0000
100.0000
100.0000
99.9676
40300
gduggal-bwafbINDELD1_5decoyhet
100.0000
100.0000
100.0000
99.9726
20200
gduggal-bwafbINDELD1_5decoyhomalt
100.0000
100.0000
100.0000
99.9426
10100
gduggal-bwafbINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.6296
20200
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
99.3683
1001000
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.2195
70800
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.6248
20200
gduggal-bwafbINDELD1_5map_l125_m0_e0hetalt
100.0000
100.0000
100.0000
96.8421
30300
gduggal-bwafbINDELD1_5map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
97.2222
20200
gduggal-bwafbINDELD1_5map_l250_m0_e0homalt
100.0000
100.0000
100.0000
98.0882
1301300
gduggal-bwafbINDELD1_5map_l250_m1_e0homalt
100.0000
100.0000
100.0000
95.4726
5705700
gduggal-bwafbINDELD1_5map_l250_m2_e0homalt
100.0000
100.0000
100.0000
95.7717
6006000
gduggal-bwafbINDELD1_5map_l250_m2_e1homalt
100.0000
100.0000
100.0000
95.8904
6006000
gduggal-bwafbINDELD1_5segdupwithalt*
100.0000
100.0000
100.0000
99.9942
10100
gduggal-bwafbINDELD1_5segdupwithalthet
100.0000
100.0000
100.0000
99.9910
10100
gduggal-bwafbINDELD1_5tech_badpromoters*
100.0000
100.0000
100.0000
40.6250
1901900
gduggal-bwafbINDELD1_5tech_badpromotershet
100.0000
100.0000
100.0000
41.1765
801000
gduggal-bwafbINDELD1_5tech_badpromotershomalt
100.0000
100.0000
100.0000
40.0000
90900
gduggal-bwafbINDELD6_15decoy*
100.0000
100.0000
100.0000
99.9165
10100
gduggal-bwafbINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.7444
30300
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.4000
20200
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
87.5000
10100
gduggal-bwafbINDELI16_PLUSfunc_cdshomalt
100.0000
100.0000
100.0000
66.6667
20200
gduggal-bwafbINDELI16_PLUSmap_l150_m0_e0homalt
100.0000
100.0000
100.0000
90.0000
10100
gduggal-bwafbINDELI16_PLUStech_badpromotershomalt
100.0000
100.0000
100.0000
33.3333
20200
gduggal-bwavardINDELD1_5decoyhet
100.0000
100.0000
100.0000
99.9810
20200
gduggal-bwavardINDELD1_5decoyhomalt
100.0000
100.0000
100.0000
99.9047
10100
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.8636
10100
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.7342
10100
gduggal-bwavardINDELD1_5segdupwithalt*
100.0000
100.0000
100.0000
99.9948
10100
gduggal-bwavardINDELD1_5segdupwithalthet
100.0000
100.0000
100.0000
99.9937
10100
gduggal-bwavardINDELI1_5map_l250_m0_e0homalt
100.0000
100.0000
100.0000
96.1039
90900
gduggal-bwavardINDELI6_15map_l250_m0_e0homalt
100.0000
100.0000
100.0000
93.3333
10100
gduggal-bwavardSNPtilowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
98.4064
60400
gduggal-bwaplatINDELD16_PLUSdecoyhomalt
100.0000
100.0000
100.0000
97.3684
20200
gduggal-bwaplatINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
88.8889
10100
gduggal-bwaplatINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
85.7143
10100
gduggal-bwaplatINDELD16_PLUSmap_l125_m0_e0hetalt
100.0000
100.0000
100.0000
96.6667
10100
gduggal-bwaplatINDELD16_PLUSmap_l150_m1_e0hetalt
100.0000
100.0000
100.0000
96.2963
10100
gduggal-bwaplatINDELD16_PLUSmap_l150_m2_e0hetalt
100.0000
100.0000
100.0000
96.4286
10100