PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
82651-82700 / 86044 show all
eyeh-varpipeSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
84.2105
101200
eyeh-varpipeSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
82.0513
10700
eyeh-varpipeSNPtilowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
85.8696
105200
eyeh-varpipeSNPtilowcmp_SimpleRepeat_triTR_11to50hetalt
100.0000
100.0000
100.0000
71.4286
101400
eyeh-varpipeSNPtimap_l100_m0_e0hetalt
100.0000
100.0000
100.0000
68.8705
14011300
eyeh-varpipeSNPtimap_l125_m0_e0hetalt
100.0000
100.0000
100.0000
75.0988
806300
eyeh-varpipeSNPtimap_l125_m1_e0hetalt
100.0000
100.0000
100.0000
67.5456
24016000
eyeh-varpipeSNPtimap_l125_m2_e0hetalt
100.0000
100.0000
100.0000
69.4885
24017300
eyeh-varpipeSNPtimap_l125_m2_e1hetalt
100.0000
100.0000
100.0000
69.2308
24017600
eyeh-varpipeSNPtimap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
78.1726
304300
eyeh-varpipeSNPtimap_l150_m1_e0hetalt
100.0000
100.0000
100.0000
71.8157
15010400
eyeh-varpipeSNPtimap_l150_m2_e0hetalt
100.0000
100.0000
100.0000
73.2861
15011300
eyeh-varpipeSNPtimap_l150_m2_e1hetalt
100.0000
100.0000
100.0000
73.0679
15011500
eyeh-varpipeSNPtimap_l250_m1_e0hetalt
100.0000
100.0000
100.0000
86.8571
402300
eyeh-varpipeSNPtimap_l250_m2_e0hetalt
100.0000
100.0000
100.0000
86.8293
502700
eyeh-varpipeSNPtimap_l250_m2_e1hetalt
100.0000
100.0000
100.0000
87.0813
502700
eyeh-varpipeSNPtitech_badpromotershomalt
100.0000
100.0000
100.0000
44.5946
4104100
eyeh-varpipeSNPtvfunc_cdshetalt
100.0000
100.0000
100.0000
67.8571
1001800
eyeh-varpipeSNPtvfunc_cdshomalt
100.0000
100.0000
100.0000
26.3664
17040168400
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
85.8696
101300
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
87.5000
10800
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
81.8841
205000
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
79.4979
204900
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
86.9478
306500
eyeh-varpipeSNPtvlowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
64.9123
1016000
eyeh-varpipeSNPtvlowcmp_SimpleRepeat_triTR_11to50hetalt
100.0000
100.0000
100.0000
53.5354
104600
eyeh-varpipeSNPtvtech_badpromotershomalt
100.0000
100.0000
100.0000
53.7500
3903700
gduggal-bwafbINDEL*decoyhomalt
100.0000
100.0000
100.0000
99.9253
30300
gduggal-bwaplatSNP*segduphetalt
100.0000
100.0000
100.0000
98.1771
70700
gduggal-bwaplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10100
gduggal-bwaplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
66.6667
10100
gduggal-bwaplatSNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
83.3333
20200
gduggal-bwaplatSNPtilowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
66.6667
10100
gduggal-bwaplatSNPtisegduphetalt
100.0000
100.0000
100.0000
99.1667
20200
gduggal-bwaplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
87.5000
10100
gduggal-bwaplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
83.3333
10100
gduggal-bwaplatSNPtvlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
77.2727
50500
gduggal-bwaplatSNPtvlowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
99.1935
10100
gduggal-bwaplatSNPtvlowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
99.0385
10100
gduggal-bwaplatSNPtvsegduphetalt
100.0000
100.0000
100.0000
98.1771
70700
gduggal-bwavardINDEL*decoyhomalt
100.0000
100.0000
100.0000
99.9255
30200
gduggal-bwavardINDEL*segdupwithalt*
100.0000
100.0000
100.0000
99.9978
10100
gduggal-bwavardINDEL*segdupwithalthet
100.0000
100.0000
100.0000
99.9973
10100
gduggal-bwavardINDELD16_PLUSdecoyhomalt
100.0000
100.0000
100.0000
98.2759
20100
gduggal-bwafbINDEL*segdupwithalt*
100.0000
100.0000
100.0000
99.9972
10100
gduggal-bwafbINDEL*segdupwithalthet
100.0000
100.0000
100.0000
99.9956
10100
gduggal-bwafbINDEL*tech_badpromotershetalt
100.0000
100.0000
100.0000
66.6667
40200
gduggal-bwafbINDELC1_5*hetalt
100.0000
100.0000
100.0000
97.5610
10100
gduggal-bwafbINDELC1_5HG002compoundhet*
100.0000
100.0000
100.0000
93.7500
10100
gduggal-bwafbINDELC1_5HG002compoundhethetalt
100.0000
100.0000
100.0000
90.0000
10100