PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
82251-82300 / 86044 show all | |||||||||||||||
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.4737 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.2529 | 15 | 0 | 15 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8333 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.4082 | 9 | 0 | 9 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 72.2222 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.4066 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 98.5714 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 98.2456 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-gatk | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.3982 | 7 | 0 | 7 | 0 | 0 | ||
| ckim-isaac | INDEL | * | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9321 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-isaac | INDEL | * | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9477 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-isaac | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8267 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.8880 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.7742 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.4286 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9964 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | * | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9949 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | * | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 28.5714 | 4 | 0 | 5 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | decoy | * | 100.0000 | 100.0000 | 100.0000 | 98.2405 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | decoy | het | 100.0000 | 100.0000 | 100.0000 | 98.2063 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 96.4912 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.7778 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.7778 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 1 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.6310 | 1 | 0 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 100.0000 | 100.0000 | 100.0000 | 99.5086 | 1 | 0 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.0895 | 6 | 0 | 6 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.2819 | 4 | 0 | 4 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0392 | 2 | 0 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.3976 | 1 | 0 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.3846 | 1 | 0 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 79.2793 | 23 | 0 | 23 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 53.6082 | 45 | 0 | 45 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 2 | 0 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 4 | 0 | 4 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.4286 | 4 | 0 | 4 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.4912 | 4 | 0 | 4 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.7778 | 1 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.7778 | 1 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 94.5205 | 12 | 0 | 12 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 33.3333 | 4 | 0 | 4 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 4 | 0 | 4 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9664 | 4 | 0 | 3 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9733 | 2 | 0 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9303 | 1 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 21.2766 | 74 | 0 | 74 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.9729 | 11 | 0 | 11 | 0 | 0 | ||