PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
80951-81000 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 62.6426 | 786 | 0 | 786 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 67.7122 | 525 | 0 | 525 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | decoy | * | 100.0000 | 100.0000 | 100.0000 | 98.8571 | 6 | 0 | 6 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | decoy | het | 100.0000 | 100.0000 | 100.0000 | 98.8506 | 4 | 0 | 4 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 98.6395 | 2 | 0 | 2 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 74.4681 | 12 | 0 | 12 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 76.4706 | 8 | 0 | 8 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 69.2308 | 4 | 0 | 4 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.7199 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.7110 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.5000 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 56.7568 | 12 | 0 | 16 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 82.3077 | 23 | 0 | 23 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 22.8571 | 51 | 0 | 54 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 62.1849 | 45 | 0 | 45 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.5833 | 4 | 0 | 5 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l125_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 96.0526 | 12 | 0 | 12 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l125_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 95.8525 | 9 | 0 | 9 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.6667 | 2 | 0 | 2 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l125_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 94.8454 | 20 | 0 | 20 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.4286 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l125_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 95.4338 | 20 | 0 | 20 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.1053 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l125_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 95.5556 | 20 | 0 | 20 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l150_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 96.5347 | 7 | 0 | 7 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l150_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 95.1724 | 7 | 0 | 7 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l150_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 94.6970 | 14 | 0 | 14 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l150_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 94.7883 | 16 | 0 | 16 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.4286 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l150_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 94.8553 | 16 | 0 | 16 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 98.6667 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l250_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 98.1132 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l250_m1_e0 | * | 100.0000 | 100.0000 | 100.0000 | 97.4359 | 4 | 0 | 4 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 97.1963 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.3077 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l250_m2_e0 | * | 100.0000 | 100.0000 | 100.0000 | 97.4619 | 5 | 0 | 5 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l250_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 97.7612 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.3077 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0000 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l250_m2_e1 | * | 100.0000 | 100.0000 | 100.0000 | 97.4874 | 5 | 0 | 5 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l250_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 97.7941 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.3077 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0000 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 95.8621 | 12 | 0 | 12 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9281 | 4 | 0 | 4 | 0 | 0 | ||