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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
80551-80600 / 86044 show all
bgallagher-sentieonSNPti**
99.9476
99.9680
99.9272
17.4519
208484466720847811519117
7.7024
bgallagher-sentieonSNPtiHG002complexvarhet
99.9477
99.9234
99.9720
16.9632
3145252413144718829
32.9545
egarrison-hhgaSNP*func_cds*
99.9477
99.9725
99.9229
23.9159
18145518145140
0.0000
hfeng-pmm2SNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9480
99.9257
99.9703
57.5983
20184152018465
83.3333
cchapple-customSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9481
99.9110
99.9851
30.4766
67396672411
100.0000
ckim-dragenSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9481
99.9259
99.9703
34.6642
67405674022
100.0000
hfeng-pmm2SNPti**
99.9484
99.9340
99.9629
17.4396
20841351376208407777472
9.3023
cchapple-customSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9485
99.9228
99.9742
56.3906
38843387510
0.0000
dgrover-gatkSNPtvHG002complexvar*
99.9486
99.9236
99.9736
22.0729
2459641882458736532
49.2308
jlack-gatkSNPtiHG002complexvarhomalt
99.9491
99.9163
99.9819
18.2375
1933011621932903532
91.4286
bgallagher-sentieonSNPtvHG002complexvar*
99.9492
99.9313
99.9671
22.0213
2459831692458928131
38.2716
hfeng-pmm1SNP***
99.9496
99.9227
99.9766
18.0950
305225723623052118715107
14.9650
astatham-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9498
99.8997
100.0000
34.2631
39834398300
cchapple-customSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9498
99.9248
99.9749
29.7121
39843397811
100.0000
hfeng-pmm2SNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9505
99.9307
99.9703
51.1679
1009571009532
66.6667
rpoplin-dv42SNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9507
99.9014
100.0000
54.7268
60826608200
raldana-dualsentieonSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9507
99.9671
99.9343
54.3615
60862608644
100.0000
raldana-dualsentieonINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9509
99.9705
99.9313
54.2320
1017531017577
100.0000
rpoplin-dv42SNP*HG002complexvarhomalt
99.9511
99.9421
99.9601
19.9304
288407167288378115109
94.7826
rpoplin-dv42SNPti*het
99.9511
99.9279
99.9742
18.1937
12809679241280907330164
49.6970
rpoplin-dv42SNPtv**
99.9512
99.9420
99.9604
21.8980
969128562969027384163
42.4479
astatham-gatkSNP*HG002complexvarhomalt
99.9516
99.9158
99.9875
19.8527
2883312432883063634
94.4444
dgrover-gatkSNP*HG002complexvar*
99.9517
99.9260
99.9773
19.0606
75382355875366817188
51.4620
astatham-gatkSNPtifunc_cdshomalt
99.9526
99.9052
100.0000
19.7136
52705527000
ltrigg-rtg2SNPtifunc_cdshomalt
99.9526
99.9052
100.0000
20.2844
52705527000
ckim-dragenSNPtiHG002complexvarhomalt
99.9527
99.9214
99.9840
18.3095
1933111521934173131
100.0000
dgrover-gatkSNPtiHG002complexvar*
99.9530
99.9268
99.9791
17.5262
50806437250800010656
52.8302
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_triTR_11to50het
99.9532
99.9532
99.9531
38.2523
21371213311
100.0000
jli-customSNPti**
99.9536
99.9637
99.9435
16.8976
208475575620847161179130
11.0263
bgallagher-sentieonSNP*HG002complexvar*
99.9538
99.9332
99.9744
19.0217
75387750475372219384
43.5233
jli-customSNPtvHG002complexvarhomalt
99.9542
99.9254
99.9832
22.8543
9504071950291611
68.7500
egarrison-hhgaSNPtvfunc_cds*
99.9543
100.0000
99.9086
28.4546
43710437140
0.0000
astatham-gatkSNPtiHG002complexvarhomalt
99.9545
99.9214
99.9876
18.3169
1933111521933012424
100.0000
hfeng-pmm3SNP***
99.9548
99.9339
99.9756
18.3516
30526012018305246074476
10.2151
hfeng-pmm1SNPti**
99.9548
99.9307
99.9789
16.7547
20840651446208400744067
15.2273
ckim-dragenSNP*HG002complexvarhomalt
99.9551
99.9245
99.9858
19.8995
2883562182885654141
100.0000
dgrover-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9554
99.9406
99.9703
49.4797
1009661009633
100.0000
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9556
99.9112
100.0000
51.6129
22502225000
hfeng-pmm3SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9556
99.9112
100.0000
52.9781
22502225000
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9556
99.9112
100.0000
52.0358
22502225000
bgallagher-sentieonSNPtiHG002complexvar*
99.9558
99.9337
99.9780
17.4939
50809933750803511253
47.3214
dgrover-gatkSNPti**
99.9570
99.9639
99.9500
17.7617
208475975220846961042126
12.0921
gduggal-snapfbSNP*func_cdshomalt
99.9570
99.9857
99.9284
24.3691
69781697851
20.0000
rpoplin-dv42SNPtiHG002complexvarhomalt
99.9574
99.9530
99.9617
18.4113
193372911933677472
97.2973
rpoplin-dv42SNP***
99.9587
99.9447
99.9728
19.0681
305293016893052766832433
52.0433
hfeng-pmm1SNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9589
99.9507
99.9671
54.6457
60853608522
100.0000
hfeng-pmm3SNPti**
99.9596
99.9417
99.9775
17.0194
20842951216208423646946
9.8081
hfeng-pmm3SNPtisegduphomalt
99.9600
99.9600
99.9600
88.1690
75023750233
100.0000
ckim-dragenSNPtvHG002complexvarhomalt
99.9600
99.9306
99.9895
22.9484
9504566951481010
100.0000
raldana-dualsentieonSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9604
99.9703
99.9505
48.8948
1009931009955
100.0000