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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
80451-80500 / 86044 show all
jli-customINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9319
99.9727
99.8911
50.1493
36651366844
100.0000
dgrover-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9319
99.9546
99.9092
41.9457
22001220022
100.0000
dgrover-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9319
100.0000
99.8638
51.2807
36660366655
100.0000
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9319
99.9546
99.9092
41.9151
22001220022
100.0000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9319
99.9546
99.9092
41.8384
22001220022
100.0000
hfeng-pmm2SNPtiHG002compoundhethomalt
99.9324
99.9459
99.9189
30.7750
73904739066
100.0000
egarrison-hhgaSNP**homalt
99.9329
99.8872
99.9785
18.1960
117883013311178859253173
68.3794
jli-customSNPti*het
99.9331
99.9539
99.9123
17.4772
12813005911281266112587
7.7333
eyeh-varpipeSNPtiHG002complexvarhomalt
99.9332
99.9188
99.9475
17.3280
1933071571807989569
72.6316
jlack-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9333
99.9259
99.9407
34.6955
67405674043
75.0000
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9333
99.8668
100.0000
51.4674
22493224900
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9333
99.8668
100.0000
53.2144
22493230700
jlack-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9334
99.9112
99.9556
51.6538
22502225011
100.0000
jlack-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9343
99.9507
99.9179
54.3410
60853608555
100.0000
dgrover-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9343
99.9343
99.9343
54.4380
60844608444
100.0000
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9343
99.9343
99.9343
54.3868
60844608444
100.0000
dgrover-gatkSNPtifunc_cds*
99.9347
99.9565
99.9130
23.1014
13781613779120
0.0000
hfeng-pmm3SNPtifunc_cds*
99.9347
99.9637
99.9057
21.9632
13782513780130
0.0000
jli-customSNPtiHG002complexvarhet
99.9353
99.9002
99.9704
16.9557
3144523143144189332
34.4086
jlack-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9357
99.9228
99.9485
59.3004
38843388422
100.0000
raldana-dualsentieonSNPti**
99.9357
99.9205
99.9510
17.0225
208385316582083794102254
5.2838
dgrover-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9357
99.9228
99.9485
59.3897
38843388422
100.0000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9357
99.9228
99.9485
59.3344
38843388422
100.0000
jmaeng-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9361
99.9509
99.9214
54.3780
1017351017388
100.0000
bgallagher-sentieonINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9362
99.9607
99.9116
54.3220
1017441017499
100.0000
dgrover-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9362
99.9607
99.9116
54.3466
1017441017499
100.0000
jmaeng-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9363
99.8728
100.0000
62.5298
785178500
ltrigg-rtg2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9363
99.8728
100.0000
62.0276
785182400
jlack-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9363
99.8728
100.0000
62.3140
785178500
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9363
99.8728
100.0000
61.9302
785178500
egarrison-hhgaSNPti*homalt
99.9365
99.8935
99.9794
16.8582
802183855802203165113
68.4848
hfeng-pmm1SNP*func_cds*
99.9366
99.9614
99.9119
23.2953
18143718140160
0.0000
rpoplin-dv42SNP*func_cds*
99.9366
99.9449
99.9284
24.7263
181401018137133
23.0769
ndellapenna-hhgaSNP*func_cds*
99.9367
99.9614
99.9119
23.5700
18143718143160
0.0000
hfeng-pmm3SNP*func_cds*
99.9367
99.9669
99.9064
23.5356
18144618141170
0.0000
hfeng-pmm3SNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9373
99.8997
99.9749
35.9073
39834398311
100.0000
jlack-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9373
99.9248
99.9498
33.7544
39843398421
50.0000
ckim-dragenSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9373
99.9248
99.9498
33.3890
39843398422
100.0000
hfeng-pmm1SNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9381
99.9059
99.9703
56.7400
20180192018066
100.0000
raldana-dualsentieonINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9381
99.9734
99.9027
56.1708
112933112931111
100.0000
jli-customSNP***
99.9382
99.9603
99.9160
18.2994
3053407121230533022566212
8.2619
hfeng-pmm1SNPtv**
99.9383
99.9053
99.9713
20.8629
96877291896869127843
15.4676
hfeng-pmm1SNPtifunc_cds*
99.9384
99.9637
99.9130
21.7209
13782513780120
0.0000
ndellapenna-hhgaSNPtifunc_cds*
99.9384
99.9565
99.9202
22.0527
13781613781110
0.0000
rpoplin-dv42SNPtvHG002complexvarhomalt
99.9385
99.9201
99.9569
22.8530
9503576950114137
90.2439
jlack-gatkSNPtvHG002complexvarhomalt
99.9385
99.8959
99.9811
22.6324
9501299949941814
77.7778
hfeng-pmm3SNPti*het
99.9388
99.9112
99.9664
17.2454
12807531138128070343018
4.1861
bgallagher-sentieonSNPtvHG002complexvarhet
99.9389
99.9237
99.9542
21.4883
1506161151505406921
30.4348
hfeng-pmm1SNPtiHG002compoundhethomalt
99.9392
99.9594
99.9189
30.5967
73913739166
100.0000
dgrover-gatkSNPti*het
99.9394
99.9568
99.9221
18.8587
1281337554128128399987
8.7087