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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1605 1606 1607 1608 1609 1610 1611 1612 1613 ... 1720 1721 » 80401-80450 / 86044 show all
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.9262	99.9262	99.9262	45.5021	4062	3	4062	3	3	100.0000
dgrover-gatk	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.9262	99.9016	99.9508	45.9204	4061	4	4061	2	1	50.0000
hfeng-pmm3	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9263	99.9017	99.9509	53.9245	10168	10	10168	5	5	100.0000
jli-custom	SNP	*	HG002complexvar	het	99.9263	99.8859	99.9667	18.4399	464966	531	464872	155	54	34.8387
ckim-dragen	SNP	tv	HG002complexvar	*	99.9267	99.9175	99.9359	22.5633	245949	203	246200	158	80	50.6329
hfeng-pmm2	SNP	tv	*	*	99.9268	99.9066	99.9471	21.6564	968784	906	968705	513	42	8.1871
dgrover-gatk	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9269	99.8904	99.9635	30.9962	2735	3	2735	1	1	100.0000
dgrover-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9275	99.9275	99.9275	36.3783	2756	2	2756	2	2	100.0000
hfeng-pmm1	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9275	99.9275	99.9275	37.0751	2756	2	2756	2	2	100.0000
jlack-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9275	99.9275	99.9275	36.0093	2756	2	2756	2	2	100.0000
bgallagher-sentieon	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9275	99.9275	99.9275	36.2312	2756	2	2756	2	2	100.0000
ckim-vqsr	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.9276	99.8554	100.0000	56.9648	1381	2	1381	0	0
cchapple-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.9276	99.8554	100.0000	53.0584	1381	2	1366	0	0
dgrover-gatk	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.9282	99.8911	99.9653	56.4446	20177	22	20177	7	7	100.0000
dgrover-gatk	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.9282	99.9202	99.9362	44.6182	6263	5	6263	4	3	75.0000
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.9282	99.9043	99.9521	44.5722	6262	6	6262	3	3	100.0000
dgrover-gatk	SNP	*	func_cds	*	99.9284	99.9614	99.8954	24.8199	18143	7	18140	19	0	0.0000
ndellapenna-hhga	SNP	ti	*	homalt	99.9286	99.8893	99.9678	16.7330	802149	889	802170	258	209	81.0078
astatham-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9292	99.9646	99.8938	56.3468	11292	4	11292	12	11	91.6667
jli-custom	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9292	99.9557	99.9027	55.9852	11291	5	11292	11	11	100.0000
bgallagher-sentieon	SNP	*	*	*	99.9296	99.9673	99.8919	18.9151	3053620	999	3053471	3303	195	5.9037
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9299	99.9299	99.9299	28.6857	1426	1	1426	1	1	100.0000
hfeng-pmm2	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9300	100.0000	99.8600	30.7319	1427	0	1427	2	1	50.0000
hfeng-pmm3	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9300	100.0000	99.8600	29.0467	1427	0	1427	2	1	50.0000
ltrigg-rtg2	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9300	99.9299	99.9300	23.7460	1426	1	1428	1	1	100.0000
ltrigg-rtg1	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9300	99.9299	99.9300	24.2713	1426	1	1428	1	1	100.0000
ckim-dragen	SNP	*	HG002complexvar	*	99.9301	99.9223	99.9379	19.4552	753795	586	754278	469	236	50.3198
raldana-dualsentieon	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9303	100.0000	99.8608	45.9493	2152	0	2152	3	3	100.0000
eyeh-varpipe	SNP	*	HG002complexvar	homalt	99.9303	99.9127	99.9480	18.2871	288323	252	263218	137	103	75.1825
jli-custom	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9303	100.0000	99.8608	46.0035	2152	0	2152	3	3	100.0000
hfeng-pmm2	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9303	99.9535	99.9071	44.5246	2151	1	2151	2	2	100.0000
raldana-dualsentieon	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.9306	99.8911	99.9703	61.3700	10086	11	10086	3	3	100.0000
hfeng-pmm1	SNP	ti	*	het	99.9312	99.8931	99.9694	16.7684	1280521	1370	1280470	392	29	7.3980
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9312	99.9214	99.9410	54.0442	10170	8	10170	6	6	100.0000
ckim-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9312	99.9607	99.9018	54.3175	10174	4	10174	10	10	100.0000
hfeng-pmm1	SNP	tv	func_cds	*	99.9314	99.9542	99.9085	27.9499	4369	2	4368	4	0	0.0000
ndellapenna-hhga	SNP	tv	func_cds	*	99.9314	99.9771	99.8857	28.0901	4370	1	4370	5	0	0.0000
hfeng-pmm3	SNP	*	*	het	99.9317	99.8994	99.9639	18.5779	1871702	1885	1871578	675	30	4.4444
hfeng-pmm3	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.9317	99.8636	100.0000	45.3935	1464	2	1464	0	0
ckim-dragen	SNP	ti	HG002complexvar	*	99.9317	99.9245	99.9389	17.8695	508052	384	508287	311	156	50.1608
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.9317	99.8636	100.0000	40.1819	1464	2	1447	0	0
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.9317	99.8636	100.0000	43.0793	1464	2	1464	0	0
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.9317	99.8636	100.0000	43.1014	1464	2	1464	0	0
hfeng-pmm3	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9318	99.9091	99.9545	42.3026	2199	2	2199	1	1	100.0000
hfeng-pmm1	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9318	99.9091	99.9545	42.4084	2199	2	2199	1	1	100.0000
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.9318	99.9318	99.9318	43.0237	1465	1	1465	1	1	100.0000
hfeng-pmm2	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9318	99.9091	99.9545	42.7232	2199	2	2199	1	1	100.0000
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9318	99.8637	100.0000	42.6858	2198	3	2198	0	0
ckim-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9318	99.9727	99.8910	51.2943	3665	1	3665	4	4	100.0000
jlack-gatk	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9319	100.0000	99.8639	41.8470	2201	0	2201	3	3	100.0000

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