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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
80351-80400 / 86044 show all
dgrover-gatkSNPtv**
99.9211
99.9611
99.8812
22.3092
969313377969227115381
7.0252
dgrover-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.9214
99.9010
99.9417
55.7201
171601717156108
80.0000
rpoplin-dv42INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9214
99.9214
99.9214
54.3038
1017081016988
100.0000
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9214
99.9312
99.9116
54.3329
1017171016799
100.0000
hfeng-pmm2SNPti*het
99.9215
99.8989
99.9442
17.8405
12805951296128054571524
3.3566
dgrover-gatkSNP**het
99.9216
99.9564
99.8868
20.4479
187277081718726452122144
6.7861
rpoplin-dv42SNPtiHG002complexvar*
99.9216
99.8731
99.9701
17.4429
507791645507725152130
85.5263
ltrigg-rtg2SNP*HG002complexvarhomalt
99.9218
99.8676
99.9761
19.6026
2881923822881186968
98.5507
eyeh-varpipeSNP*HG002compoundhethetalt
99.9219
99.8840
99.9599
21.9998
8611747832
66.6667
eyeh-varpipeSNPtvHG002complexvarhomalt
99.9220
99.9001
99.9440
20.4163
9501695891805038
76.0000
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.9221
99.8717
99.9725
60.1200
10897141089332
66.6667
jli-customSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9228
99.9228
99.9228
59.2856
38843388432
66.6667
bgallagher-sentieonSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9232
99.8960
99.9505
56.3257
2017821201781010
100.0000
bgallagher-sentieonSNPti*het
99.9232
99.9613
99.8851
18.4052
12813954961281341147476
5.1560
gduggal-bwafbSNPti*homalt
99.9234
99.8676
99.9793
17.0184
8019761063801993166111
66.8675
egarrison-hhgaSNPtifunc_cdshet
99.9236
99.9647
99.8825
23.1721
850138501100
0.0000
rpoplin-dv42SNPtifunc_cdshet
99.9236
99.9530
99.8942
23.9564
85004849892
22.2222
raldana-dualsentieonSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.9237
99.8474
100.0000
34.6480
13092130900
jli-customSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.9237
99.8474
100.0000
34.7458
13092130900
hfeng-pmm1SNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.9237
99.8474
100.0000
35.1338
13092130900
jlack-gatkSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.9237
99.8474
100.0000
34.0222
13092130900
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.9237
99.8474
100.0000
34.5500
13092130900
gduggal-bwafbSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.9237
99.8474
100.0000
38.6097
13092130700
jmaeng-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.9238
99.8478
100.0000
80.6261
656165600
hfeng-pmm1SNP**het
99.9238
99.8812
99.9665
18.1036
18713612226187123662848
7.6433
egarrison-hhgaSNP*func_cdshet
99.9239
99.9731
99.8747
24.7221
11158311158140
0.0000
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.9240
100.0000
99.8480
80.5383
657065710
0.0000
ltrigg-rtg2SNPtiHG002complexvarhomalt
99.9240
99.8739
99.9741
18.1301
1932192441931175049
98.0000
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.9240
100.0000
99.8480
80.1148
657065710
0.0000
rpoplin-dv42SNP*lowcmp_SimpleRepeat_triTR_11to50het
99.9241
99.9133
99.9349
33.6595
46124460732
66.6667
rpoplin-dv42SNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.9243
99.8836
99.9650
55.5651
17157201715365
83.3333
ndellapenna-hhgaSNP**homalt
99.9243
99.8838
99.9648
18.1151
117879013711178818415332
80.0000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9248
99.9248
99.9248
37.2719
39843398433
100.0000
rpoplin-dv42INDELD1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.9248
99.8496
100.0000
40.4484
13282132800
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.9248
99.8496
100.0000
41.6849
13282132900
egarrison-hhgaSNPtvfunc_cdshet
99.9248
100.0000
99.8497
29.2851
26570265740
0.0000
ltrigg-rtg1INDELD1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.9248
99.8496
100.0000
34.3750
13282132300
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.9248
99.8496
100.0000
41.9185
13282132600
rpoplin-dv42SNP*lowcmp_SimpleRepeat_triTR_11to50*
99.9252
99.9048
99.9456
33.1240
73487734343
75.0000
jli-customSNPtvHG002complexvar*
99.9252
99.8822
99.9683
21.9781
2458622902457917833
42.3077
egarrison-hhgaSNPtv*homalt
99.9252
99.8738
99.9766
20.9039
3766474763766568860
68.1818
hfeng-pmm1SNP*segduphomalt
99.9256
99.9535
99.8977
88.8973
107385107381111
100.0000
hfeng-pmm3SNPtiHG002compoundhethomalt
99.9256
99.9189
99.9324
30.4123
73886738855
100.0000
hfeng-pmm3SNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9257
99.8911
99.9604
56.1148
20177222017787
87.5000
astatham-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9258
99.8517
100.0000
35.0718
673510673500
cchapple-customSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9260
99.9343
99.9177
51.2440
60844607052
40.0000
raldana-dualsentieonSNP***
99.9260
99.9131
99.9389
18.4181
305196526543051826186797
5.1955
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.9261
100.0000
99.8524
72.4033
13530135320
0.0000
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.9261
100.0000
99.8524
72.8729
13530135321
50.0000
hfeng-pmm1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.9261
99.9261
99.9261
72.6113
13521135210
0.0000