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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
80301-80350 / 86044 show all
dgrover-gatkSNPtiHG002compoundhethomalt
99.9121
99.9189
99.9053
30.4654
73886738877
100.0000
jli-customSNPtiHG002compoundhethomalt
99.9121
99.9324
99.8918
30.7138
73895738988
100.0000
hfeng-pmm3SNPtimap_sirenhomalt
99.9129
99.8892
99.9367
51.9265
3787442378682414
58.3333
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.9129
99.8992
99.9266
60.1913
10900111089685
62.5000
jli-customSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9133
99.8812
99.9455
56.3725
201752420175117
63.6364
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.9133
100.0000
99.8267
69.4709
576057610
0.0000
raldana-dualsentieonSNPtisegduphomalt
99.9134
99.8668
99.9600
87.2078
749510749533
100.0000
hfeng-pmm1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.9134
99.8615
99.9653
69.5900
11536161153643
75.0000
hfeng-pmm1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.9134
99.8615
99.9653
69.5900
11536161153643
75.0000
gduggal-bwafbSNPtiHG002compoundhethetalt
99.9136
99.8273
100.0000
23.3422
578157800
rpoplin-dv42SNPtiHG002compoundhethetalt
99.9136
99.8273
100.0000
21.6802
578157800
ltrigg-rtg1SNPtiHG002compoundhethetalt
99.9136
99.8273
100.0000
20.9016
578157900
ckim-dragenSNPtiHG002compoundhethetalt
99.9136
99.8273
100.0000
21.5739
578157800
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.9139
99.9016
99.9262
45.6684
40614406131
33.3333
dgrover-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10het
99.9143
99.8827
99.9458
56.3849
11071131106764
66.6667
ckim-dragenSNP*HG002complexvarhet
99.9146
99.9212
99.9081
19.1598
465130367465401428195
45.5607
rpoplin-dv42SNP*func_cdshet
99.9149
99.9462
99.8836
25.6262
11155611152133
23.0769
ndellapenna-hhgaSNPtv*homalt
99.9152
99.8722
99.9583
20.9089
376641482376648157123
78.3439
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.9156
99.9069
99.9243
55.5895
171611617157138
61.5385
ckim-dragenSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9158
99.8613
99.9703
61.4918
10083141008533
100.0000
ckim-dragenINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9159
99.9380
99.8938
56.3777
112897112841211
91.6667
hfeng-pmm2INDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9159
99.9292
99.9026
55.9613
112888112881110
90.9091
hfeng-pmm3INDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9159
99.9115
99.9203
55.8220
11286101128699
100.0000
hfeng-pmm3SNPtv*het
99.9161
99.8738
99.9586
21.3235
59094974759087524512
4.8980
hfeng-pmm2SNPtifunc_cds*
99.9166
99.9710
99.8623
22.6414
13783413781190
0.0000
jli-customSNPtifunc_cds*
99.9166
99.9492
99.8840
21.7559
13780713780160
0.0000
jlack-gatkSNPtiHG002complexvar*
99.9170
99.8944
99.9396
17.8349
507899537507834307122
39.7394
hfeng-pmm2SNP*func_cds*
99.9174
99.9780
99.8569
24.2548
18146418143260
0.0000
ltrigg-rtg2SNPtvHG002complexvarhomalt
99.9174
99.8549
99.9800
22.4289
94973138950011919
100.0000
ckim-dragenSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.9175
99.9267
99.9084
60.9850
10903810906102
20.0000
dgrover-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.9175
99.8900
99.9450
60.3037
10899121089565
83.3333
rpoplin-dv42SNP*HG002complexvar*
99.9179
99.8694
99.9664
18.9545
753396985753221253214
84.5850
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.9181
100.0000
99.8363
52.3782
24390243940
0.0000
ckim-vqsrINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9182
99.9454
99.8909
51.3011
36642366444
100.0000
ckim-dragenSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.9182
99.9590
99.8774
49.7020
24381244430
0.0000
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9182
99.9727
99.8638
51.1578
36651366555
100.0000
raldana-dualsentieonSNPtiHG002compoundhethomalt
99.9189
99.9189
99.9189
30.4421
73886738866
100.0000
ckim-dragenSNPtiHG002complexvarhet
99.9189
99.9266
99.9111
17.5776
314535231314661280125
44.6429
eyeh-varpipeSNPtisegduphomalt
99.9189
99.9600
99.8777
88.4551
75023735199
100.0000
gduggal-bwafbSNP**homalt
99.9194
99.8626
99.9762
18.5273
117854116211178572280175
62.5000
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.9198
99.9599
99.8798
58.8255
24931249331
33.3333
rpoplin-dv42SNPtvfunc_cds*
99.9199
99.9314
99.9085
29.6249
43683436741
25.0000
jli-customSNPtisegduphomalt
99.9200
99.8934
99.9467
87.3710
74978749744
100.0000
hfeng-pmm2SNPtvfunc_cds*
99.9200
100.0000
99.8401
29.0024
43710437070
0.0000
hfeng-pmm2SNPtisegduphomalt
99.9201
99.9600
99.8802
88.1936
75023750299
100.0000
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.9202
99.9202
99.9202
44.4375
62635626353
60.0000
bgallagher-sentieonINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9204
99.9646
99.8762
56.3374
112924112921413
92.8571
dgrover-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9204
99.9646
99.8762
56.3643
112924112921413
92.8571
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9204
99.9557
99.8850
56.3788
112915112911312
92.3077
ckim-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9204
99.9646
99.8762
56.3829
112924112921413
92.8571