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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
80101-80150 / 86044 show all
bgallagher-sentieonSNP*segduphomalt
99.8883
99.8697
99.9069
88.1168
1072914107291010
100.0000
hfeng-pmm2SNPtv*het
99.8886
99.8560
99.9212
22.0414
59084485259077046618
3.8627
hfeng-pmm2SNP*HG002compoundhethomalt
99.8887
99.8887
99.8887
35.3481
1077012107701211
91.6667
raldana-dualsentieonSNP*HG002compoundhethomalt
99.8887
99.8609
99.9165
34.8192
10767151076898
88.8889
bgallagher-sentieonSNP*HG002compoundhethomalt
99.8887
99.9165
99.8609
34.8774
107739107681514
93.3333
eyeh-varpipeSNPtiHG002complexvar*
99.8888
99.9038
99.8738
17.3355
507948489484239612191
31.2092
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.8889
99.7780
100.0000
51.4582
22475224700
ckim-dragenSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.8889
99.7780
100.0000
51.4175
22475226200
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.8893
100.0000
99.7788
74.2205
13530135331
33.3333
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.8893
100.0000
99.7788
74.1369
13530135331
33.3333
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.8893
100.0000
99.7788
74.2205
13530135331
33.3333
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.8893
100.0000
99.7788
74.1813
13530135331
33.3333
hfeng-pmm3SNPtvmap_sirenhomalt
99.8898
99.8724
99.9071
55.8869
172182217215168
50.0000
bgallagher-sentieonSNP*func_cds*
99.8899
99.9669
99.8129
24.1761
18144618141340
0.0000
ltrigg-rtg2SNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.8903
99.8539
99.9268
27.2049
27344273022
100.0000
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.8903
99.8539
99.9268
27.7249
27344273022
100.0000
ndellapenna-hhgaSNPti**
99.8903
99.8233
99.9574
16.8793
208182536862081847888298
33.5586
gduggal-bwafbSNPtiHG002complexvarhomalt
99.8904
99.8351
99.9457
18.2578
19314531919315910588
83.8095
bgallagher-sentieonSNPtv**
99.8908
99.9655
99.8163
21.9055
969355335969269178478
4.3722
hfeng-pmm1INDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8909
99.8909
99.8909
48.7917
36624366244
100.0000
bgallagher-sentieonINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8910
99.9727
99.8094
51.1312
36651366577
100.0000
jlack-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8910
99.8415
99.9405
60.8743
10081161008166
100.0000
astatham-gatkSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.8911
99.7825
100.0000
36.2077
27526275200
jli-customSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.8912
99.8550
99.9274
36.4538
27544275422
100.0000
ltrigg-rtg2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.8914
99.7831
100.0000
57.0031
13803140600
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.8914
99.7831
100.0000
57.0227
13803138000
ckim-dragenSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.8914
99.7831
100.0000
57.0233
13803138600
jlack-gatkSNP*HG002complexvarhet
99.8914
99.8855
99.8973
19.1615
464964533464834478152
31.7992
hfeng-pmm2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.8914
99.7831
100.0000
58.8551
13803138000
hfeng-pmm2SNPtiHG002complexvar*
99.8914
99.8002
99.9829
17.3851
50742010165073618738
43.6782
hfeng-pmm3INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.8917
99.7835
100.0000
57.3148
461146100
hfeng-pmm1INDELD1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
99.8917
99.7835
100.0000
29.5107
461146100
raldana-dualsentieonSNPtiHG002complexvar*
99.8917
99.7990
99.9846
17.3582
50741410225073547829
37.1795
raldana-dualsentieonINDELD1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
99.8917
99.7835
100.0000
28.5271
461146100
jlack-gatkSNPtiHG002compoundhethomalt
99.8918
99.8648
99.9188
30.3225
738410738466
100.0000
astatham-gatkSNPtiHG002compoundhethomalt
99.8918
99.8783
99.9053
30.4740
73859738577
100.0000
hfeng-pmm2SNPtvsegduphomalt
99.8919
99.9074
99.8765
90.2428
32353323544
100.0000
hfeng-pmm3SNPtvsegduphomalt
99.8920
99.9382
99.8457
90.1933
32362323655
100.0000
raldana-dualsentieonSNP*map_sirenhomalt
99.8920
99.8187
99.9655
49.6673
55056100550471919
100.0000
raldana-dualsentieonSNP*func_cds*
99.8926
99.9614
99.8239
23.4025
18143718140320
0.0000
ltrigg-rtg1SNPtvmap_sirenhomalt
99.8926
99.8318
99.9535
54.5447
17211291720585
62.5000
jpowers-varprowlSNP*func_cdshomalt
99.8926
99.9570
99.8283
23.7867
6976369761212
100.0000
rpoplin-dv42SNPtvHG002complexvarhet
99.8928
99.8249
99.9608
21.2882
1504672641503825946
77.9661
eyeh-varpipeSNP*map_sirenhomalt
99.8931
99.8749
99.9112
54.6593
5508769529054725
53.1915
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8931
99.7865
100.0000
53.0439
607513607800
jlack-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8935
99.8564
99.9306
55.5702
2017029201701413
92.8571
hfeng-pmm1SNPtiHG002complexvar*
99.8935
99.8000
99.9872
17.3497
50741910175073606531
47.6923
ckim-dragenSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8935
99.8416
99.9455
56.0535
2016732201781111
100.0000
hfeng-pmm1INDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8937
99.8407
99.9468
55.7785
11278181127866
100.0000
egarrison-hhgaSNPtiHG002complexvarhomalt
99.8937
99.8480
99.9395
18.4037
19316929419318811794
80.3419