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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1597 1598 1599 1600 1601 1602 1603 1604 1605 ... 1720 1721 » 80001-80050 / 86044 show all
hfeng-pmm2	SNP	ti	map_l100_m2_e1	homalt	99.8756	99.8810	99.8702	62.5670	18472	22	18472	24	14	58.3333
hfeng-pmm3	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8756	99.8135	99.9378	52.0442	1606	3	1606	1	0	0.0000
cchapple-custom	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8760	99.7722	99.9801	53.5072	10074	23	10033	2	1	50.0000
rpoplin-dv42	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8762	99.8119	99.9405	50.3909	10083	19	10083	6	5	83.3333
jli-custom	INDEL	D1_5	*	homalt	99.8764	99.9428	99.8102	61.2620	48898	28	48904	93	90	96.7742
hfeng-pmm1	SNP	tv	segdup	homalt	99.8765	99.9382	99.8149	90.2264	3236	2	3236	6	6	100.0000
dgrover-gatk	SNP	tv	segdup	homalt	99.8765	99.9382	99.8149	89.5365	3236	2	3236	6	6	100.0000
raldana-dualsentieon	SNP	tv	segdup	homalt	99.8765	99.9382	99.8149	89.2756	3236	2	3236	6	6	100.0000
astatham-gatk	SNP	tv	segdup	homalt	99.8765	99.9382	99.8149	89.4470	3236	2	3236	6	6	100.0000
astatham-gatk	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8767	99.8193	99.9342	54.4187	6077	11	6077	4	4	100.0000
cchapple-custom	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8767	99.8821	99.8712	51.6311	10166	12	10084	13	11	84.6154
cchapple-custom	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8769	99.9262	99.8277	45.6225	4062	3	4055	7	1	14.2857
jli-custom	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8769	99.7786	99.9754	44.9525	4056	9	4056	1	1	100.0000
ghariani-varprowl	SNP	ti	func_cds	homalt	99.8769	99.9431	99.8107	21.2934	5272	3	5272	10	7	70.0000
raldana-dualsentieon	SNP	*	HG002complexvar	*	99.8769	99.7713	99.9826	18.8281	752656	1725	752511	131	47	35.8779
rpoplin-dv42	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8769	99.7950	99.9589	49.0692	2434	5	2434	1	0	0.0000
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8771	100.0000	99.7546	51.5937	2439	0	2439	6	0	0.0000
dgrover-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.8773	99.8283	99.9264	44.0264	4070	7	4073	3	1	33.3333
egarrison-hhga	SNP	*	*	het	99.8773	99.8048	99.9499	18.3927	1869930	3657	1869954	938	124	13.2196
hfeng-pmm2	INDEL	D1_5	HG002complexvar	homalt	99.8773	99.8396	99.9150	58.5881	10581	17	10585	9	7	77.7778
cchapple-custom	SNP	ti	*	*	99.8773	99.8866	99.8679	19.3368	2083147	2364	2081936	2754	477	17.3203
rpoplin-dv42	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.8773	99.7549	100.0000	64.8765	1221	3	1223	0	0
bgallagher-sentieon	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.8773	99.8283	99.9264	43.4517	4070	7	4073	3	1	33.3333
jlack-gatk	SNP	tv	HG002complexvar	het	99.8776	99.8932	99.8620	22.3009	150570	161	150494	208	64	30.7692
ltrigg-rtg2	SNP	ti	HG002complexvar	*	99.8779	99.7988	99.9570	17.4272	507413	1023	507316	218	98	44.9541
qzeng-custom	SNP	*	func_cds	homalt	99.8779	99.8281	99.9278	20.5349	6967	12	6918	5	3	60.0000
hfeng-pmm1	SNP	*	HG002complexvar	*	99.8780	99.7704	99.9859	18.8078	752649	1732	752504	106	51	48.1132
ltrigg-rtg2	SNP	tv	map_siren	homalt	99.8781	99.7912	99.9651	52.8102	17204	36	17198	6	4	66.6667
rpoplin-dv42	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8787	99.8366	99.9207	56.8327	20166	33	20166	16	7	43.7500
hfeng-pmm3	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.8787	99.7922	99.9653	69.1476	11528	24	11528	4	2	50.0000
hfeng-pmm3	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.8787	99.7922	99.9653	69.1476	11528	24	11528	4	2	50.0000
eyeh-varpipe	SNP	ti	map_l100_m1_e0	homalt	99.8788	99.8719	99.8856	62.1452	17937	23	17464	20	12	60.0000
jli-custom	SNP	*	HG002compoundhet	homalt	99.8794	99.8887	99.8702	35.2217	10770	12	10769	14	12	85.7143
eyeh-varpipe	SNP	ti	map_l100_m2_e1	homalt	99.8795	99.8756	99.8834	64.4482	18471	23	17986	21	12	57.1429
jlack-gatk	SNP	ti	segdup	homalt	99.8800	99.8135	99.9466	87.6556	7491	14	7491	4	4	100.0000
ckim-dragen	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8801	100.0000	99.7606	60.2222	2494	0	2500	6	2	33.3333
cchapple-custom	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8802	99.9362	99.8243	43.3188	6264	4	6250	11	3	27.2727
jli-custom	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8803	99.8245	99.9361	43.9129	6257	11	6257	4	3	75.0000
rpoplin-dv42	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8805	99.8672	99.8937	56.0776	11281	15	11280	12	12	100.0000
rpoplin-dv42	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8811	99.8613	99.9009	61.7921	10083	14	10083	10	2	20.0000
eyeh-varpipe	SNP	ti	map_l100_m2_e0	homalt	99.8811	99.8744	99.8878	64.4546	18286	23	17806	20	12	60.0000
jli-custom	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.8814	99.8223	99.9407	64.3853	1685	3	1685	1	0	0.0000
dgrover-gatk	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.8814	99.7630	100.0000	64.2235	1684	4	1684	0	0
ckim-gatk	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.8814	99.7630	100.0000	64.0862	1684	4	1684	0	0
egarrison-hhga	SNP	tv	*	*	99.8815	99.8074	99.9558	20.9138	967822	1868	967852	428	112	26.1682
bgallagher-sentieon	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8817	99.8462	99.9171	55.0271	25320	39	25323	21	16	76.1905
ndellapenna-hhga	SNP	*	*	*	99.8818	99.8118	99.9519	18.1821	3048871	5748	3048919	1468	467	31.8120
rpoplin-dv42	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.8821	99.9214	99.8429	48.2941	2542	2	2542	4	0	0.0000
jli-custom	SNP	ti	func_cds	het	99.8825	99.9530	99.8121	22.8972	8500	4	8500	16	0	0.0000
hfeng-pmm3	INDEL	D1_5	*	homalt	99.8825	99.8835	99.8815	58.1721	48869	57	48874	58	56	96.5517

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