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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1596 1597 1598 1599 1600 1601 1602 1603 1604 ... 1720 1721 » 79951-80000 / 86044 show all
gduggal-bwafb	SNP	tv	HG002complexvar	homalt	99.8685	99.7960	99.9410	22.9952	94917	194	94931	56	49	87.5000
rpoplin-dv42	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	het	99.8687	99.8426	99.8949	39.6597	11415	18	11408	12	3	25.0000
hfeng-pmm2	SNP	*	map_l100_m2_e1	homalt	99.8687	99.8741	99.8633	63.3911	27761	35	27761	38	19	50.0000
eyeh-varpipe	SNP	ti	map_l150_m2_e1	homalt	99.8689	99.8310	99.9067	75.1753	7680	13	7499	7	5	71.4286
ckim-dragen	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8692	99.9098	99.8288	57.6963	11074	10	11076	19	3	15.7895
hfeng-pmm2	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.8696	99.7685	99.9710	64.2990	3447	8	3447	1	1	100.0000
astatham-gatk	SNP	*	segdup	homalt	99.8696	99.8324	99.9068	88.1147	10725	18	10725	10	10	100.0000
hfeng-pmm3	INDEL	I1_5	HG002complexvar	homalt	99.8699	99.8736	99.8662	51.8330	13431	17	13436	18	16	88.8889
hfeng-pmm2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.8700	99.7836	99.9566	69.9578	11527	25	11527	5	3	60.0000
hfeng-pmm2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.8700	99.7836	99.9566	69.9578	11527	25	11527	5	3	60.0000
eyeh-varpipe	SNP	*	map_l100_m1_e0	homalt	99.8701	99.8556	99.8846	63.0607	26964	39	25962	30	16	53.3333
hfeng-pmm2	SNP	*	func_cds	het	99.8702	99.9731	99.7675	25.5047	11158	3	11155	26	0	0.0000
ndellapenna-hhga	SNP	ti	HG002complexvar	homalt	99.8705	99.8403	99.9007	18.4130	193154	309	193175	192	171	89.0625
rpoplin-dv42	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.8707	99.8790	99.8625	38.9762	18161	22	18154	25	8	32.0000
bgallagher-sentieon	SNP	ti	func_cds	het	99.8707	99.9647	99.7769	24.1158	8501	3	8499	19	0	0.0000
hfeng-pmm2	SNP	ti	func_cds	het	99.8707	99.9647	99.7769	23.7626	8501	3	8499	19	0	0.0000
jli-custom	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8713	99.8037	99.9390	54.3200	14741	29	14742	9	4	44.4444
ckim-dragen	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8713	99.8218	99.9208	48.8376	10084	18	10093	8	8	100.0000
astatham-gatk	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8713	99.7942	99.9485	59.3783	3879	8	3879	2	2	100.0000
jpowers-varprowl	SNP	ti	*	homalt	99.8713	99.9620	99.7807	18.3988	802733	305	802784	1764	1014	57.4830
dgrover-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8718	99.8265	99.9171	55.1617	25315	44	25318	21	16	76.1905
hfeng-pmm2	SNP	ti	map_l100_m1_e0	homalt	99.8719	99.8775	99.8664	60.1447	17938	22	17938	24	14	58.3333
rpoplin-dv42	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	het	99.8719	99.8294	99.9145	39.6596	4681	8	4676	4	1	25.0000
eyeh-varpipe	SNP	*	map_l100_m2_e1	homalt	99.8719	99.8597	99.8841	65.3160	27757	39	26718	31	16	51.6129
dgrover-gatk	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.8720	99.8720	99.8720	30.2429	3901	5	3900	5	1	20.0000
hfeng-pmm3	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8722	99.7607	99.9840	43.9807	6253	15	6253	1	1	100.0000
eyeh-varpipe	SNP	*	map_l100_m2_e0	homalt	99.8725	99.8583	99.8868	65.3085	27484	39	26466	30	16	53.3333
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8726	99.7455	100.0000	61.9602	784	2	784	0	0
rpoplin-dv42	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8726	99.7455	100.0000	64.4122	784	2	784	0	0
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8726	99.7455	100.0000	62.1439	784	2	784	0	0
cchapple-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8726	99.7455	100.0000	58.2576	784	2	781	0	0
astatham-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8726	99.7455	100.0000	62.0155	784	2	784	0	0
asubramanian-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8726	99.7455	100.0000	62.0339	784	2	784	0	0
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.8728	99.8982	99.8474	55.2916	3927	4	3927	6	1	16.6667
ltrigg-rtg2	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.8729	99.7825	99.9635	34.6365	2752	6	2741	1	1	100.0000
astatham-gatk	SNP	ti	func_cds	*	99.8730	99.7897	99.9564	22.5679	13758	29	13756	6	0	0.0000
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8736	100.0000	99.7475	55.0256	1580	0	1580	4	0	0.0000
rpoplin-dv42	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.8741	99.9407	99.8075	37.7626	6741	4	6741	13	5	38.4615
raldana-dualsentieon	SNP	tv	func_cds	*	99.8743	99.9771	99.7716	27.8940	4370	1	4369	10	0	0.0000
hfeng-pmm2	SNP	*	HG002complexvar	*	99.8743	99.7689	99.9799	18.8346	752638	1743	752495	151	59	39.0728
jlack-gatk	SNP	*	segdup	homalt	99.8743	99.8418	99.9069	88.3916	10726	17	10726	10	10	100.0000
hfeng-pmm2	SNP	ti	map_l100_m2_e0	homalt	99.8744	99.8798	99.8689	62.5825	18287	22	18287	24	14	58.3333
dgrover-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8747	99.8104	99.9390	55.0186	14742	28	14744	9	4	44.4444
egarrison-hhga	SNP	tv	HG002complexvar	homalt	99.8748	99.8086	99.9410	22.7459	94929	182	94938	56	46	82.1429
astatham-gatk	SNP	*	HG002compoundhet	homalt	99.8748	99.8702	99.8794	34.8528	10768	14	10763	13	12	92.3077
ltrigg-rtg2	SNP	*	*	*	99.8749	99.8935	99.8562	17.0058	3051374	3252	3051531	4395	283	6.4391
ltrigg-rtg1	SNP	*	*	*	99.8754	99.8921	99.8587	17.5113	3051330	3296	3051518	4317	267	6.1849
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8755	99.7514	100.0000	52.7941	1605	4	1605	0	0
bgallagher-sentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8755	99.7514	100.0000	43.3263	1605	4	1605	0	0
hfeng-pmm2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8756	99.8135	99.9378	53.0803	1606	3	1606	1	0	0.0000

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