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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1594 1595 1596 1597 1598 1599 1600 1601 1602 ... 1720 1721 » 79851-79900 / 86044 show all
hfeng-pmm1	SNP	*	map_l100_m2_e0	homalt	99.8583	99.8438	99.8728	63.3749	27480	43	27480	35	17	48.5714
jmaeng-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8583	99.9226	99.7940	60.8923	3875	3	3875	8	0	0.0000
cchapple-custom	SNP	ti	func_cds	*	99.8586	99.9202	99.7971	24.6780	13776	11	13774	28	1	3.5714
astatham-gatk	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8587	99.7475	99.9702	56.3085	20148	51	20148	6	6	100.0000
ckim-gatk	INDEL	I1_5	HG002complexvar	homalt	99.8588	99.9033	99.8143	52.9260	13435	13	13441	25	24	96.0000
jli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8588	99.8119	99.9058	80.0075	1061	2	1061	1	1	100.0000
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8588	99.8119	99.9058	81.3717	1061	2	1061	1	1	100.0000
rpoplin-dv42	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.8590	99.8446	99.8734	64.1005	27635	43	27622	35	19	54.2857
bgallagher-sentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8590	99.9059	99.8120	81.1281	1062	1	1062	2	1	50.0000
egarrison-hhga	SNP	ti	map_l100_m2_e1	homalt	99.8593	99.7891	99.9296	62.7744	18455	39	18455	13	13	100.0000
cchapple-custom	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8596	99.7197	100.0000	23.7942	1423	4	1422	0	0
ckim-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8597	99.9065	99.8129	76.8740	2136	2	2134	4	1	25.0000
dgrover-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8597	99.9065	99.8129	76.6441	2136	2	2134	4	1	25.0000
hfeng-pmm1	SNP	*	map_l100_m2_e1	homalt	99.8597	99.8453	99.8740	63.3660	27753	43	27753	35	17	48.5714
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8598	99.7898	99.9299	26.0373	1424	3	1425	1	1	100.0000
egarrison-hhga	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8598	99.7898	99.9299	28.4855	1424	3	1425	1	0	0.0000
cchapple-custom	SNP	ti	segdup	homalt	99.8600	99.8668	99.8533	87.0523	7495	10	7487	11	11	100.0000
cchapple-custom	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8601	99.8647	99.8556	55.3095	11069	15	11065	16	7	43.7500
ltrigg-rtg2	INDEL	D1_5	segdup	homalt	99.8605	99.7214	100.0000	92.9966	358	1	355	0	0
egarrison-hhga	INDEL	D1_5	segdup	homalt	99.8605	99.7214	100.0000	94.5201	358	1	358	0	0
hfeng-pmm1	SNP	ti	map_l100_m2_e0	homalt	99.8607	99.8416	99.8798	62.5925	18280	29	18280	22	12	54.5455
bgallagher-sentieon	SNP	tv	map_siren	homalt	99.8607	99.7854	99.9361	52.7521	17203	37	17200	11	9	81.8182
bgallagher-sentieon	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8608	100.0000	99.7220	47.5832	2152	0	2152	6	6	100.0000
jli-custom	INDEL	D1_5	segdup	homalt	99.8609	100.0000	99.7222	94.3074	359	0	359	1	1	100.0000
ckim-dragen	INDEL	D1_5	segdup	homalt	99.8609	100.0000	99.7222	94.4853	359	0	359	1	1	100.0000
jlack-gatk	SNP	tv	segdup	homalt	99.8611	99.9074	99.8149	89.7982	3235	3	3235	6	6	100.0000
bgallagher-sentieon	SNP	tv	segdup	homalt	99.8611	99.9074	99.8149	89.4615	3235	3	3235	6	6	100.0000
jli-custom	SNP	tv	segdup	homalt	99.8611	99.9074	99.8149	89.3818	3235	3	3235	6	6	100.0000
hfeng-pmm2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.8615	99.7820	99.9410	72.3104	16938	37	16938	10	6	60.0000
hfeng-pmm2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.8615	99.7820	99.9410	72.3104	16938	37	16938	10	6	60.0000
raldana-dualsentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8617	100.0000	99.7238	62.2523	361	0	361	1	1	100.0000
rpoplin-dv42	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.8619	99.8160	99.9079	64.2822	2170	4	2170	2	1	50.0000
ckim-gatk	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.8619	99.7241	100.0000	34.3461	3976	11	3976	0	0
ltrigg-rtg1	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.8619	99.7492	99.9748	32.5060	3977	10	3969	1	0	0.0000
hfeng-pmm1	SNP	ti	map_l100_m2_e1	homalt	99.8621	99.8432	99.8810	62.5754	18465	29	18465	22	12	54.5455
astatham-gatk	SNP	*	func_cds	*	99.8621	99.7796	99.9448	24.2600	18110	40	18107	10	0	0.0000
eyeh-varpipe	SNP	ti	map_l150_m1_e0	homalt	99.8623	99.8226	99.9020	73.1001	7314	13	7136	7	5	71.4286
astatham-gatk	INDEL	I1_5	HG002complexvar	homalt	99.8625	99.9182	99.8069	52.9404	13437	11	13442	26	26	100.0000
hfeng-pmm1	INDEL	I1_5	HG002complexvar	homalt	99.8625	99.8736	99.8514	52.0252	13431	17	13435	20	17	85.0000
ndellapenna-hhga	SNP	*	HG002complexvar	homalt	99.8626	99.8292	99.8960	19.9404	288081	493	288110	300	268	89.3333
rpoplin-dv42	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.8628	99.8712	99.8543	55.6453	17828	23	17825	26	14	53.8462
eyeh-varpipe	SNP	ti	map_l125_m1_e0	homalt	99.8628	99.8280	99.8977	68.2342	11026	19	10743	11	6	54.5455
jli-custom	SNP	tv	func_cds	*	99.8629	99.9771	99.7489	28.1332	4370	1	4370	11	0	0.0000
ndellapenna-hhga	SNP	tv	*	*	99.8629	99.7865	99.9395	20.8763	967620	2070	967646	586	175	29.8635
eyeh-varpipe	SNP	ti	HG002complexvar	het	99.8630	99.8948	99.8311	17.2379	314435	331	297366	503	109	21.6700
rpoplin-dv42	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.8633	99.8472	99.8795	59.6020	55546	85	55530	67	38	56.7164
ckim-gatk	INDEL	D1_5	HG002complexvar	homalt	99.8633	99.8773	99.8492	60.1757	10585	13	10592	16	14	87.5000
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8634	99.7271	100.0000	43.1128	1462	4	1462	0	0
hfeng-pmm2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8634	99.7271	100.0000	46.4273	1462	4	1462	0	0
ltrigg-rtg1	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8635	99.7274	100.0000	40.2446	2195	6	2199	0	0

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